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AT1G17700.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : prenylated RAB acceptor 1.F1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
prenylated RAB acceptor 1.F1 (PRA1.F1); CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA1 (Prenylated rab acceptor) family protein (TAIR:AT1G55190.1); Has 501 Blast hits to 501 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 27; Plants - 322; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5130eggNOG:KOG3142EMBL:AC034257EMBL:BT012593
EMBL:BT014815EMBL:CP002684EnsemblPlants:AT1G17700EnsemblPlants:AT1G17700.1
entrez:838346GeneID:838346Genevisible:Q9FZ63GO:GO:0005783
GO:GO:0010008GO:GO:0016021GO:GO:0016192Gramene:AT1G17700.1
hmmpanther:PTHR19317hmmpanther:PTHR19317:SF2HOGENOM:HOG000238420IntAct:Q9FZ63
InterPro:IPR004895KEGG:ath:AT1G17700OMA:EIDHRIVPaxDb:Q9FZ63
Pfam:PF03208Pfam:Q9FZ63PhylomeDB:Q9FZ63PIR:H86311
PRIDE:Q9FZ63PRO:PR:Q9FZ63Proteomes:UP000006548RefSeq:NP_173212.1
STRING:3702.AT1G17700.1TAIR:AT1G17700tair10-symbols:PRA1.F1TMHMM:TMhelix
UniGene:At.41819UniProt:Q9FZ63
Coordinates (TAIR10) chr1:+:6089588..6090130
Molecular Weight (calculated) 20446.20 Da
IEP (calculated) 9.97
GRAVY (calculated) 0.35
Length 180 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTYGTNQKS SNDLAPKLEY ITRGINQHKR SGLATRRPWK QMLDLGSFNF PRKLATVITR IRANTVYFQT NYTIVVLFSV FLSLIWNPFS LLVLLALLGA
101: WLFLYFLRDE PLTVFDREID HRIVLIIMSV ITLSILFLTD AKLNIAVAIV AGALAVLSHA AVRKTEDLFQ TDEETSLLNP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)