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AT5G50335.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J5BKeggNOG:ENOG410Z61MEMBL:AK118566EMBL:AY085514
EMBL:BT004646EMBL:CP002688EnsemblPlants:AT5G50335EnsemblPlants:AT5G50335.1
entrez:835100GeneID:835100Gramene:AT5G50335.1hmmpanther:PTHR38398
hmmpanther:PTHR38398:SF1IntAct:Q8LEB7KEGG:ath:AT5G50335OMA:CRFKRST
PhylomeDB:Q8LEB7Proteomes:UP000006548RefSeq:NP_568726.1STRING:3702.AT5G50335.1
TAIR:AT5G50335UniGene:At.29737UniProt:Q8LEB7
Coordinates (TAIR10) chr5:-:20489391..20489615
Molecular Weight (calculated) 8462.24 Da
IEP (calculated) 9.51
GRAVY (calculated) -0.67
Length 74 amino acids
Sequence (TAIR10)
(BLAST)
1: MVCRAEEAMK QRGIIKRCKE DDRHQKKKMQ SITNCNKEKS CRFKRSTSNL DNDGASSAIF LLACIACSSF SYHL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)