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AT1G54990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): endoplasmic reticulum
  • PMID:15276431 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
auxin response mutant (AXR4)
Computational
Description (TAIR10)
AUXIN RESISTANT 4 (AXR4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus, response to mechanical stimulus, auxin polar transport; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; Has 139 Blast hits to 139 proteins in 43 species: Archae - 0; Bacteria - 61; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Protein Annotations
BioGrid:27166eggNOG:ENOG410IG6VeggNOG:ENOG4111R0REMBL:AC064840
EMBL:AC069144EMBL:AF424608EMBL:AY074334EMBL:AY122984
EMBL:CP002684EnsemblPlants:AT1G54990EnsemblPlants:AT1G54990.1entrez:841941
ESTHER:arath-AXR4Gene3D:3.40.50.1820GeneID:841941Genevisible:Q9FZ33
GO:GO:0005739GO:GO:0005774GO:GO:0005783GO:GO:0005789
GO:GO:0009612GO:GO:0009733GO:GO:0009926GO:GO:0016021
GO:GO:0016787Gramene:AT1G54990.1hmmpanther:PTHR10992hmmpanther:PTHR10992:SF773
HOGENOM:HOG000034246InParanoid:Q9FZ33InterPro:IPR000073InterPro:IPR029058
KEGG:ath:AT1G54990OMA:DLPGNGFPaxDb:Q9FZ33Pfam:PF00561
Pfam:Q9FZ33PhylomeDB:Q9FZ33PIR:D96591PRIDE:Q9FZ33
PRO:PR:Q9FZ33ProteinModelPortal:Q9FZ33Proteomes:UP000006548RefSeq:NP_564672.2
STRING:3702.AT1G54990.1SUPFAM:SSF53474TAIR:AT1G54990tair10-symbols:AXR4
tair10-symbols:RGRtair10-symbols:RGR1TMHMM:TMhelixUniGene:At.26299
UniGene:At.67609UniGene:At.74172UniProt:Q9FZ33
Coordinates (TAIR10) chr1:+:20511565..20513489
Molecular Weight (calculated) 52422.10 Da
IEP (calculated) 5.85
GRAVY (calculated) -0.23
Length 473 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIITEEEED PKTLNPPKNK PKDSDFTKSE STMKNPKPQS QNPFPFWFYF TVVVSLATII FISLSLFSSQ NDPRSWFLSL PPALRQHYSN GRTIKVQVNS
101: NESPIEVFVA ESGSIHTETV VIVHGLGLSS FAFKEMIQSL GSKGIHSVAI DLPGNGFSDK SMVVIGGDRE IGFVARVKEV YGLIQEKGVF WAFDQMIETG
201: DLPYEEIIKL QNSKRRSFKA IELGSEETAR VLGQVIDTLG LAPVHLVLHD SALGLASNWV SENWQSVRSV TLIDSSISPA LPLWVLNVPG IREILLAFSF
301: GFEKLVSFRC SKEMTLSDID AHRILLKGRN GREAVVASLN KLNHSFDIAQ WGNSDGINGI PMQVIWSSEA SKEWSDEGQR VAKALPKAKF VTHSGSRWPQ
401: ESKSGELADY ISEFVSLLPK SIRRVAEEPI PEEVQKVLEE AKAGDDHDHH HGHGHAHAGY SDAYGLGEEW TTT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)