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AT2G20420.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31911558 (2020): mitochondrion
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24727099 (2014): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23750852 (2013): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22968828 (2012): mitochondrion
  • PMID:22923678 (2012): mitochondrion
  • PMID:22574745 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:22540835 (2012): mitochondrion
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21472856 (2011): mitochondrion
  • PMID:21433285 (2011): plasma membrane
  • PMID:21311031 (2011): mitochondrion
  • PMID:21296373 (2011): mitochondrion
  • PMID:19334764 (2009): plasma membrane
  • PMID:18385124 (2008): mitochondrion
  • PMID:17137349 (2006): mitochondrion
  • PMID:14671022 (2004): mitochondrion
  • PMID:12492832 (2002): mitochondrion
  • PMID:11743115 (2001): mitochondrion
  • PMID:11743114 (2001): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ATP citrate lyase (ACL) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATP citrate lyase (ACL) family protein; FUNCTIONS IN: succinate-CoA ligase (GDP-forming) activity, copper ion binding, ATP binding; INVOLVED IN: response to cadmium ion, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Succinyl-CoA synthetase, beta subunit (InterPro:IPR005809), Succinyl-CoA synthetase, beta subunit, conserved site (InterPro:IPR017866), ATP-citrate lyase/succinyl-CoA ligase (InterPro:IPR005811), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), ATP-grasp fold, succinyl-CoA synthetase-type (InterPro:IPR013650), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ATP-citrate lyase A-1 (TAIR:AT1G10670.4); Has 9337 Blast hits to 9333 proteins in 2108 species: Archae - 181; Bacteria - 4147; Metazoa - 466; Fungi - 228; Plants - 81; Viruses - 0; Other Eukaryotes - 4234 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G20420-MONOMEREC:6.2.1.5eggNOG:COG0045eggNOG:KOG2799
EMBL:AC006569EMBL:AJ001808EMBL:AY099707EMBL:AY128889
EMBL:CP002685EnsemblPlants:AT2G20420EnsemblPlants:AT2G20420.1entrez:816561
Gene3D:3.30.1490.20Gene3D:3.30.470.20Gene3D:3.40.50.261GeneID:816561
Genevisible:O82662GO:GO:0004775GO:GO:0005507GO:GO:0005524
GO:GO:0005739GO:GO:0006099GO:GO:0046686Gramene:AT2G20420.1
gramene_pathway:6.2.1.5gramene_pathway:PWY-5690gramene_pathway:PWYQT-4481hmmpanther:PTHR11815
hmmpanther:PTHR11815:SF1HOGENOM:HOG000007059InParanoid:O82662InterPro:IPR005809
InterPro:IPR005811InterPro:IPR011761InterPro:IPR013650InterPro:IPR013815
InterPro:IPR013816InterPro:IPR016102InterPro:IPR017866KEGG:00020+6.2.1.5
KEGG:00640+6.2.1.5KEGG:00660+6.2.1.5KEGG:00720+6.2.1.5KEGG:ath:AT2G20420
KO:K01900OMA:DRNDSIEPANTHER:PTHR11815PaxDb:O82662
Pfam:O82662Pfam:PF00549Pfam:PF08442Pfscan:PS50975
PhylomeDB:O82662PIR:T51809PIRSF:PIRSF001554PRIDE:O82662
PRO:PR:O82662PROSITE:PS01217PROSITE:PS50975ProteinModelPortal:O82662
Proteomes:UP000006548Reactome:R-ATH-71403RefSeq:NP_179632.1scanprosite:PS01217
SMR:O82662STRING:3702.AT2G20420.1SUPFAM:SSF52210SUPFAM:SSF56059
TAIR:AT2G20420TIGRfam:TIGR01016TIGRFAMs:TIGR01016UniGene:At.21151
UniPathway:UPA00223UniProt:O82662
Coordinates (TAIR10) chr2:+:8805574..8807858
Molecular Weight (calculated) 45348.20 Da
IEP (calculated) 6.69
GRAVY (calculated) -0.05
Length 421 amino acids
Sequence (TAIR10)
(BLAST)
001: MRGLVNKLVS RSLSISGKWQ NQQLRRLNIH EYQGAELMGK YGVNVPKGVA ASSLEEVKKA IQDVFPNESE LVVKSQILAG GRGLGTFKSG LKGGVHIVKR
101: DEAEEIAGKM LGQVLVTKQT GPQGKVVSKV YLCEKLSLVN EMYFSIILDR KSAGPLIIAC KKGGTSIEDL AEKFPDMIIK VPIDVFAGIT DEDAAKVVDG
201: LAPKAADRKD SIEQVKKLYE LFRKTDCTML EINPLAETST NQLVAADAKL NFDDNAAFRQ KEVFAMRDPT QEDPREVAAA KVDLNYIGLD GEIGCMVNGA
301: GLAMATMDII KLHGGTPANF LDVGGNASEH QVVEAFKILT SDDKVKAILV NIFGGIMKCD VIASGIVNAA KEVALKVPVV VRLEGTNVEQ GKRILKESGM
401: KLITADDLDD AAEKAVKALA H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)