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AT3G61460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.618
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : brassinosteroid-responsive RING-H2
Curator
Summary (TAIR10)
Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide.
Computational
Description (TAIR10)
brassinosteroid-responsive RING-H2 (BRH1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to brassinosteroid stimulus, response to chitin; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G63840.1); Has 6755 Blast hits to 6739 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 1714; Fungi - 535; Plants - 3593; Viruses - 29; Other Eukaryotes - 884 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1286-MONOMEReggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AF134155
EMBL:AL132962EMBL:AY065300EMBL:AY086562EMBL:AY117307
EMBL:CP002686EnsemblPlants:AT3G61460EnsemblPlants:AT3G61460.1entrez:825319
Gene3D:3.30.40.10GeneID:825319GO:GO:0008270GO:GO:0009741
GO:GO:0010200GO:GO:0016021Gramene:AT3G61460.1hmmpanther:PTHR14155
hmmpanther:PTHR14155:SF110HOGENOM:HOG000239353InterPro:IPR001841InterPro:IPR011016
InterPro:IPR013083KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-
KEGG:ath:AT3G61460OMA:KLFVHTLPfam:PF13639Pfscan:PS50089
PhylomeDB:Q9XF92PIR:T47938PROSITE:PS50089Proteomes:UP000006548
RefSeq:NP_191705.1SMART:SM00184SMART:SM00744SMR:Q9XF92
STRING:3702.AT3G61460.1SUPFAM:SSF57850TAIR:AT3G61460tair10-symbols:BRH1
TMHMM:TMhelixUniGene:At.942unipathway:UPA00143UniProt:Q9XF92
Coordinates (TAIR10) chr3:-:22741701..22742213
Molecular Weight (calculated) 20061.10 Da
IEP (calculated) 4.64
GRAVY (calculated) -0.12
Length 170 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFPVGYTEV FLPKLFVQTL SILGFIRTIV FSIFRFLGLS DFLEMDQTWP DYTSYPTRIP ETRSPFSALL IREILPVIKF EELTNSGEDL PENCAVCLYE
101: FEGEQEIRWL RNCRHIFHRS CLDRWMDHDQ KTCPLCRTPF VPDEMQEEFN QRLWAASGVH DFHCPVTELL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)