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AT1G29460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.688
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SAUR-like auxin-responsive protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SAUR-like auxin-responsive protein family ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT1G29500.1); Has 775 Blast hits to 762 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 775; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1SAeggNOG:ENOG410YS77EMBL:AC068667EMBL:AK228996
EMBL:AY085357EMBL:BT029320EMBL:CP002684EnsemblPlants:AT1G29460
EnsemblPlants:AT1G29460.1entrez:839822GeneID:839822Genevisible:Q0WPR6
GO:GO:0005886GO:GO:0007275GO:GO:0009734GO:GO:0009926
GO:GO:0046620Gramene:AT1G29460.1hmmpanther:PTHR31175hmmpanther:PTHR31175:SF1
InParanoid:Q0WPR6InterPro:IPR003676KEGG:ath:AT1G29460OMA:YLHTAVF
PaxDb:Q0WPR6Pfam:PF02519Pfam:Q0WPR6PhylomeDB:Q0WPR6
PIR:D86417PRIDE:Q0WPR6PRO:PR:Q0WPR6Proteomes:UP000006548
RefSeq:NP_564330.1STRING:3702.AT1G29460.1TAIR:AT1G29460UniGene:At.40736
UniProt:Q0WPR6
Coordinates (TAIR10) chr1:-:10307609..10308055
Molecular Weight (calculated) 16916.50 Da
IEP (calculated) 10.11
GRAVY (calculated) -0.25
Length 148 amino acids
Sequence (TAIR10)
(BLAST)
001: MINTKKLLKM AKKWQQRAAL KRKRISFQRS TTTTTTTTTT TSSSTAVEKG CFVVYTVDKI RFAFPLSYLN NSVFEELLKI SEEEFGLRAG GPITLPFDSV
101: FLEYLIKFIE RRMDGDTEKA LLMSISSARC SMQPQEQQSG YTQQLLVF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)