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AT1G29450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.992
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SAUR-like auxin-responsive protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SAUR-like auxin-responsive protein family ; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT1G29500.1); Has 675 Blast hits to 661 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 675; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1SAeggNOG:ENOG410YS77EMBL:AC068667EMBL:AY086957
EMBL:BT026425EMBL:CP002684EnsemblPlants:AT1G29450EnsemblPlants:AT1G29450.1
entrez:839821GeneID:839821Genevisible:Q0V7Z5GO:GO:0005886
GO:GO:0007275GO:GO:0009734GO:GO:0009926GO:GO:0046620
Gramene:AT1G29450.1hmmpanther:PTHR31175hmmpanther:PTHR31175:SF1HOGENOM:HOG000239977
InParanoid:Q0V7Z5InterPro:IPR003676KEGG:ath:AT1G29450OMA:VENAFLM
PaxDb:Q0V7Z5Pfam:PF02519Pfam:Q0V7Z5PhylomeDB:Q0V7Z5
PIR:C86417PRIDE:Q0V7Z5PRO:PR:Q0V7Z5ProMEX:Q0V7Z5
Proteomes:UP000006548RefSeq:NP_564329.1STRING:3702.AT1G29450.1TAIR:AT1G29450
UniGene:At.40736UniGene:At.40737UniProt:Q0V7Z5
Coordinates (TAIR10) chr1:-:10305981..10306406
Molecular Weight (calculated) 15976.40 Da
IEP (calculated) 10.23
GRAVY (calculated) -0.21
Length 141 amino acids
Sequence (TAIR10)
(BLAST)
001: MMNTKKLIKM AKKWQQRAAL HRKRISFQRS SSATSSTAAE KGCFVVYTTD STRFAFPLSY LSNSVFQELL KISEEEFGLP TGGPITSPFD SVFLEYLIKL
101: VQRRMDADTE KALLMSISSA RCSSQCSLKL QERSTQQLLV F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)