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AT5G18930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.993
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Adenosylmethionine decarboxylase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BUSHY AND DWARF 2 (BUD2); FUNCTIONS IN: adenosylmethionine decarboxylase activity; INVOLVED IN: spermidine biosynthetic process, spermine biosynthetic process, polyamine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine decarboxylase (TAIR:AT3G02470.4); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G18930-MONOMERBRENDA:4.1.1.50EC:4.1.1.50eggNOG:ENOG410XRN0
eggNOG:KOG0788EMBL:AC068655EMBL:CP002688EMBL:DQ217414
EnsemblPlants:AT5G18930EnsemblPlants:AT5G18930.1entrez:832011Gene3D:3.60.90.10
GeneID:832011Genevisible:Q3E9D5GO:GO:0004014GO:GO:0005829
GO:GO:0006557GO:GO:0006597GO:GO:0008295GO:GO:0048513
Gramene:AT5G18930.1gramene_pathway:4.1.1.50gramene_pathway:ARGSPECAT-PWYgramene_pathway:BSUBPOLYAMSYN-PWY
hmmpanther:PTHR11570hmmpanther:PTHR11570:SF1HOGENOM:HOG000159915InParanoid:Q3E9D5
InterPro:IPR001985InterPro:IPR016067InterPro:IPR018166InterPro:IPR018167
KEGG:00270+4.1.1.50KEGG:00330+4.1.1.50KEGG:ath:AT5G18930KO:K01611
OMA:YQSFTPRPANTHER:PTHR11570PaxDb:Q3E9D5Pfam:PF01536
Pfam:Q3E9D5PhylomeDB:Q3E9D5PIRSF:PIRSF001355PRO:PR:Q3E9D5
PROSITE:PS01336ProteinModelPortal:Q3E9D5Proteomes:UP000006548Reactome:R-ATH-351202
RefSeq:NP_197394.1scanprosite:PS01336SMR:Q3E9D5STRING:3702.AT5G18930.1
SUPFAM:SSF56276TAIR:AT5G18930tair10-symbols:BUD2tair10-symbols:SAMDC4
TIGRfam:TIGR00535TIGRFAMs:TIGR00535UniGene:At.65528UniPathway:UPA00331
UniProt:Q3E9D5
Coordinates (TAIR10) chr5:-:6312172..6313215
Molecular Weight (calculated) 39041.20 Da
IEP (calculated) 6.00
GRAVY (calculated) -0.29
Length 347 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVSGFEGFE KRLELRFFDD DKPITKNPMG LRLIDFESLD QVLNEVQCTV VSAVANRSFD AYVLSESSLF VYPTKIIIKT CGTTQLLKSI RPLIHLARNL
101: GLTLRACRYS RGSFIFPKAQ PFPYTSFKDE VIVVEESLPK SLCYRKASVM TPSNNPSRAW HVFTASADVE SDEHVVVVEV CMTELDRVNA RSFFKRKGDE
201: KNNSDSAGKE MTRLSGIDNI NANAYICDFA FDPCGYSMNG VDGDRYSTIH VTPEDGFSYA SFECGLSLYD NGHEDISEVL SRAIDVFRPS DVSIATTYGG
301: EDYNHEVTKR VERVLAKKLD LKCRSRLMDE FPGSGTVVYQ SFTPRRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)