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AT1G04180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.323
endoplasmic reticulum 0.287
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : YUCCA 9
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
YUCCA 9 (YUC9); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: oxidation reduction; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT5G43890.1); Has 11871 Blast hits to 11852 proteins in 1762 species: Archae - 17; Bacteria - 7034; Metazoa - 796; Fungi - 1508; Plants - 659; Viruses - 0; Other Eukaryotes - 1857 (source: NCBI BLink).
Protein Annotations
EC:1.14.13.168eggNOG:COG2072eggNOG:KOG1399EMBL:AC002411
EMBL:CP002684EnsemblPlants:AT1G04180EnsemblPlants:AT1G04180.1entrez:837024
Gene3D:3.50.50.60GeneID:837024Genevisible:O64489GO:GO:0004497
GO:GO:0004499GO:GO:0009851GO:GO:0050660GO:GO:0050661
GO:GO:0055114Gramene:AT1G04180.1gramene_pathway:2.1.1.-gramene_pathway:PWY-581
hmmpanther:PTHR23023hmmpanther:PTHR23023:SF83HOGENOM:HOG000240759InParanoid:O64489
InterPro:IPR000103InterPro:IPR020946InterPro:IPR023753KEGG:ath:AT1G04180
KO:K11816OMA:PEFNKSVPaxDb:O64489Pfam:O64489
Pfam:PF00743PhylomeDB:O64489PIR:T00955PRIDE:O64489
PRINTS:PR00469PRO:PR:O64489ProteinModelPortal:O64489Proteomes:UP000006548
RefSeq:NP_171914.1SMR:O64489STRING:3702.AT1G04180.1SUPFAM:SSF51905
TAIR:AT1G04180tair10-symbols:YUC9UniGene:At.51475UniPathway:UPA00151
UniProt:O64489
Coordinates (TAIR10) chr1:+:1104623..1105988
Molecular Weight (calculated) 47404.40 Da
IEP (calculated) 8.69
GRAVY (calculated) -0.21
Length 421 amino acids
Sequence (TAIR10)
(BLAST)
001: MENMFRLMAS EEYFSERRCV WVNGPVIVGA GPSGLATAAC LHDQGVPFVV VERSDCIASL WQKRTYDRLK LHLPKKFCQL PKMPFPDHYP EYPTKRQFID
101: YLESYANRFD IKPEFNKSVE SARFDETSGL WRVRTTSDGE EMEYICRWLV VATGENAERV VPEINGLMTE FDGEVIHACE YKSGEKFRGK RVLVVGCGNS
201: GMEVSLDLAN HNAITSMVVR SSVHVLPREI MGKSTFGISV MMMKWLPLWL VDKLLLILSW LVLGSLSNYG LKRPDIGPME LKSMTGKTPV LDIGALEKIK
301: SGDVEIVPAI KQFSRHHVEL VDGQKLDIDA VVLATGYRSN VPSWLQESEF FSKNGFPKSP FPNAWKGKSG LYAAGFTRKG LAGASVDAVN IAQDIGNVWR
401: EETKRQKMRR NVGHRRCISV A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)