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AT3G21330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G00120.1); Has 2796 Blast hits to 2791 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 6; Plants - 2786; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:7019eggNOG:ENOG410IW4WeggNOG:ENOG410YJMVEMBL:AF488617
EMBL:AP001305EMBL:BT004279EMBL:BT020364EMBL:CP002686
EnsemblPlants:AT3G21330EnsemblPlants:AT3G21330.1entrez:821687Gene3D:4.10.280.10
GeneID:821687GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355Gramene:AT3G21330.1hmmpanther:PTHR12565
hmmpanther:PTHR12565:SF174HOGENOM:HOG000095219InParanoid:Q8S3D2InterPro:IPR011598
KEGG:ath:AT3G21330ncoils:CoilOMA:IYDENQSPaxDb:Q8S3D2
Pfam:PF00010Pfam:Q8S3D2Pfscan:PS50888PhylomeDB:Q8S3D2
PRIDE:Q8S3D2PRO:PR:Q8S3D2PROSITE:PS50888ProteinModelPortal:Q8S3D2
Proteomes:UP000006548RefSeq:NP_188770.1SMART:SM00353SMR:Q8S3D2
STRING:3702.AT3G21330.1SUPFAM:SSF47459TAIR:AT3G21330UniGene:At.38078
UniProt:Q8S3D2
Coordinates (TAIR10) chr3:+:7507720..7508841
Molecular Weight (calculated) 41323.50 Da
IEP (calculated) 6.68
GRAVY (calculated) -0.69
Length 373 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGLESVYAQ AMYGMTRESK IMEHQGSDLI WGGNELMARE LCSSSSYHHQ LINPNLSSCF MSDLGVLGEI QQQQHVGNRA SSIDPSSLDC LLSATSNSNN
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)