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AT2G46970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : phytochrome interacting factor 3-like 1
Curator
Summary (TAIR10)
encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family.
Computational
Description (TAIR10)
phytochrome interacting factor 3-like 1 (PIL1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: shade avoidance, red or far-red light signaling pathway, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3-like 2 (TAIR:AT3G62090.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioGrid:4646eggNOG:ENOG410JNVJeggNOG:ENOG4111DYWEMBL:AB090873
EMBL:AC004411EMBL:AY219127EMBL:AY954840EMBL:CP002685
EnsemblPlants:AT2G46970EnsemblPlants:AT2G46970.1entrez:819311Gene3D:4.10.280.10
GeneID:819311GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0009641GO:GO:0010017
Gramene:AT2G46970.1hmmpanther:PTHR12565hmmpanther:PTHR12565:SF3HOGENOM:HOG000115543
InParanoid:Q8L5W8IntAct:Q8L5W8InterPro:IPR011598KEGG:ath:AT2G46970
ncoils:CoilOMA:CENGQILPaxDb:Q8L5W8Pfam:PF00010
Pfam:Q8L5W8Pfscan:PS50888PhylomeDB:Q8L5W8PIR:T02190
PRIDE:Q8L5W8PRO:PR:Q8L5W8PROSITE:PS50888ProteinModelPortal:Q8L5W8
Proteomes:UP000006548RefSeq:NP_182220.2SMART:SM00353SMR:Q8L5W8
STRING:3702.AT2G46970.1SUPFAM:SSF47459TAIR:AT2G46970tair10-symbols:PIL1
UniGene:At.36425UniProt:Q8L5W8
Coordinates (TAIR10) chr2:-:19295617..19297678
Molecular Weight (calculated) 46582.30 Da
IEP (calculated) 9.44
GRAVY (calculated) -0.79
Length 416 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAKPLASSS SEPNMISPSS NIKPKLKDED YMELVCENGQ ILAKIRRPKN NGSFQKQRRQ SLLDLYETEY SEGFKKNIKI LGDTQVVPVS QSKPQQDKET
101: NEQMNNNKKK LKSSKIEFER NVSKSNKCVE SSTLIDVSAK GPKNVEVTTA PPDEQSAAVG RSTELYFASS SKFSRGTSRD LSCCSLKRKY GDIEEEESTY
201: LSNNSDDESD DAKTQVHART RKPVTKRKRS TEVHKLYERK RRDEFNKKMR ALQDLLPNCY KDDKASLLDE AIKYMRTLQL QVQMMSMGNG LIRPPTMLPM
301: GHYSPMGLGM HMGAAATPTS IPQFLPMNVQ ATGFPGMNNA PPQMLSFLNH PSGLIPNTPI FSPLENCSQP FVVPSCVSQT QATSFTQFPK SASASNLEDA
401: MQYRGSNGFS YYRSPN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)