suba logo
AT1G69010.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : BES1-interacting Myc-like protein 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BES1-interacting Myc-like protein 2 (BIM2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: dTDP-rhamnose biosynthetic process, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G08130.3); Has 2743 Blast hits to 2732 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 63; Plants - 2453; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
BioGrid:28454eggNOG:ENOG410IKDHeggNOG:ENOG411216ZEMBL:AC011665
EMBL:AF488627EMBL:AY080650EMBL:AY086798EMBL:BT002352
EMBL:CP002684EnsemblPlants:AT1G69010EnsemblPlants:AT1G69010.1entrez:843233
Gene3D:4.10.280.10GeneID:843233Genevisible:Q9CAA4GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351Gramene:AT1G69010.1
hmmpanther:PTHR12565hmmpanther:PTHR12565:SF123HOGENOM:HOG000070523InParanoid:Q9CAA4
InterPro:IPR011598iPTMnet:Q9CAA4KEGG:ath:AT1G69010OMA:ANECPAT
PaxDb:Q9CAA4Pfam:PF00010Pfam:Q9CAA4Pfscan:PS50888
PhylomeDB:Q9CAA4PIR:E96714PRIDE:Q9CAA4PRO:PR:Q9CAA4
PROSITE:PS50888ProteinModelPortal:Q9CAA4Proteomes:UP000006548RefSeq:NP_177064.1
SMART:SM00353SMR:Q9CAA4STRING:3702.AT1G69010.1SUPFAM:SSF47459
TAIR:AT1G69010tair10-symbols:BIM2UniGene:At.35458UniProt:Q9CAA4
Coordinates (TAIR10) chr1:+:25941804..25943599
Molecular Weight (calculated) 34488.80 Da
IEP (calculated) 5.03
GRAVY (calculated) -0.91
Length 311 amino acids
Sequence (TAIR10)
(BLAST)
001: MRTGKGNQEE EDYGEEDFNS KREGPSSNTT VHSNRDSKEN DKASAIRSKH SVTEQRRRSK INERFQILRE LIPNSEQKRD TASFLLEVID YVQYLQEKVQ
101: KYEGSYPGWS QEPTKLTPWR NNHWRVQSLG NHPVAINNGS GPGIPFPGKF EDNTVTSTPA IIAEPQIPIE SDKARAITGI SIESQPELDD KGLPPLQPIL
201: PMVQGEQANE CPATSDGLGQ SNDLVIEGGT ISISSAYSHE LLSSLTQALQ NAGIDLSQAK LSVQIDLGKR ANQGLTHEEP SSKNPLSYDT QGRDSSVEEE
301: SEHSHKRMKT L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)