AT1G02330.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Hepatocellular carcinoma-associated antigen 59 (InterPro:IPR010756); Has 1239 Blast hits to 998 proteins in 204 species: Archae - 4; Bacteria - 71; Metazoa - 421; Fungi - 109; Plants - 87; Viruses - 5; Other Eukaryotes - 542 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:462202..463521 | ||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 32351.00 Da | ||||||||||||||||||||||||||||||||
IEP (calculated) | 6.62 | ||||||||||||||||||||||||||||||||
GRAVY (calculated) | -1.18 | ||||||||||||||||||||||||||||||||
Length | 279 amino acids | ||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MPPKRNFRKR SFEEEEEDND VNKAAISEEE EKRRLALEEV KFLQKLRERK LGIPALSSTA QSSIGKVKPV EKTETEGEKE ELVLQDTFAQ ETAVLIEDPN 101: MVKYIEQELA KKRGRNIDDA EEVENELKRV EDELYKIPDH LKVKKRSSEE SSTQWTTGIA EVQLPIEYKL KNIEETEAAK KLLQERRLMG RPKSEFSIPS 201: SYSADYFQRG KDYAEKLRRE HPELYKDRGG PQADGEAAKP STSSSTNNNA DSGKSRQAAT DQIMLERFRK RERNRVMRR |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)