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AT5G60840.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 361 Blast hits to 333 proteins in 92 species: Archae - 2; Bacteria - 55; Metazoa - 145; Fungi - 36; Plants - 42; Viruses - 19; Other Eukaryotes - 62 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J40YeggNOG:ENOG410Z4PHEMBL:AK118196EMBL:BT005595
EMBL:CP002688EnsemblPlants:AT5G60840EnsemblPlants:AT5G60840.1entrez:836205
GeneID:836205Gramene:AT5G60840.1hmmpanther:PTHR36078hmmpanther:PTHR36078:SF2
HOGENOM:HOG000148324KEGG:ath:AT5G60840ncoils:CoilOMA:KQWILAK
PhylomeDB:Q8GXK2Proteomes:UP000006548RefSeq:NP_200892.2TAIR:AT5G60840
UniGene:At.29140UniProt:Q8GXK2
Coordinates (TAIR10) chr5:-:24473442..24474423
Molecular Weight (calculated) 23156.20 Da
IEP (calculated) 3.49
GRAVY (calculated) -0.70
Length 207 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTTECTTSP AIPPPQVEHS PPQEKPGNAE LFSPAPPSPP PPKITMMDIV NSNGILTDQL VDEDPSFYKY LDSEEYAEKY RSYEADFRKY LMDKHFSEVD
101: EYEETTTIDG ETIFSSVLPC ARWYADPDAS FVDPPQCIVE EEEVGEVEEM EEVEEVEEEV DEVGEVEEEQ EEVIDSASAE IPNGEISNGG TVLEDTCDVG
201: EKPDFPI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)