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AT3G23100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homolog of human DNA ligase iv-binding protein XRCC4
Curator
Summary (TAIR10)
A. thaliana homologue of the human DNA ligase IV-binding protein XRCC4. Yeast two-hybrid analysis demonstrated a strong interaction between A. thaliana DNA ligase IV and the A. thaliana homologue of the human DNA ligase IV-binding protein XRCC4. This interaction is shown to be mediated via the tandem BRCA C-terminal domains of A. thaliana DNA ligase IV protein.
Computational
Description (TAIR10)
homolog of human DNA ligase iv-binding protein XRCC4 (XRCC4); FUNCTIONS IN: protein C-terminus binding; INVOLVED IN: double-strand break repair, metabolic process, DNA recombination; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Carbamoyl phosphate synthetase, large subunit, ATP-binding (InterPro:IPR005479), DNA double-strand break repair and VJ recombination XRCC4, C-terminal (InterPro:IPR014751), DNA double-strand break repair and VJ recombination XRCC4 (InterPro:IPR010585); BEST Arabidopsis thaliana protein match is: DNA double-strand break repair and VJ recombination XRCC4 (TAIR:AT1G61410.1); Has 189 Blast hits to 182 proteins in 54 species: Archae - 0; Bacteria - 3; Metazoa - 88; Fungi - 4; Plants - 48; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Protein Annotations
BioGrid:7217eggNOG:ENOG410IFUBeggNOG:ENOG4111X3VEMBL:AB026655
EMBL:AF233528EMBL:AK175267EMBL:BT020394EMBL:BT021921
EMBL:CP002686EnsemblPlants:AT3G23100EnsemblPlants:AT3G23100.1EnsemblPlants:AT3G23100.2
entrez:821885Gene3D:1.20.5.370Gene3D:2.170.210.10GeneID:821885
Genevisible:Q682V0GO:GO:0003677GO:GO:0005524GO:GO:0005634
GO:GO:0006302GO:GO:0006310Gramene:AT3G23100.1Gramene:AT3G23100.2
hmmpanther:PTHR28559HOGENOM:HOG000240401InParanoid:Q682V0IntAct:Q682V0
InterPro:IPR005479InterPro:IPR009089InterPro:IPR010585InterPro:IPR014751
iPTMnet:Q682V0KEGG:ath:AT3G23100KO:K10886OMA:IFVKGTW
PaxDb:Q682V0Pfam:PF06632Pfam:Q682V0PhylomeDB:Q682V0
PRIDE:Q682V0PRO:PR:Q682V0PROSITE:PS00867ProteinModelPortal:Q682V0
Proteomes:UP000006548RefSeq:NP_001154639.1RefSeq:NP_188951.2scanprosite:PS00867
SMR:Q682V0STRING:3702.AT3G23100.1SUPFAM:0037779SUPFAM:SSF50809
SUPFAM:SSF58022TAIR:AT3G23100tair10-symbols:XRCC4UniGene:At.36458
UniGene:At.6127UniProt:Q682V0
Coordinates (TAIR10) chr3:+:8220721..8221991
Molecular Weight (calculated) 29855.70 Da
IEP (calculated) 5.00
GRAVY (calculated) -0.79
Length 264 amino acids
Sequence (TAIR10)
(BLAST)
001: MIGVDSKSSS TTFIETMVES EKTKHTCLRL EISGADPIFV KGTWHNSRFD ISVTDGSSSW ICNATEEEVA ERAAQWDQPV SEYLKLAEQY LGFQQPNSVY
101: SFSDALEGSK RLSWTFEKEG TKLEWRWKCK PSDDSKKITV GILDFLMEAN IRLSEEVVNK TRSFEKMRSE AERCLAQGEK LCDEKTEFES ATYAKFLSVL
201: NAKKAKLRAL RDKEDSVRVV EEEESTDKAE SFESGRSDDE KSEEEASKKA TSSKARGGKR AARS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)