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AT3G28480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : golgi 16618929
AmiGO : plasma membrane 17151019
TAIR : golgi 16618929
TAIR : plasma membrane 17151019
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:22923678 (2012): Golgi
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Oxoglutarate/iron-dependent oxygenase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Oxoglutarate/iron-dependent oxygenase; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, L-ascorbic acid binding, iron ion binding; INVOLVED IN: oxidation reduction, peptidyl-proline hydroxylation to 4-hydroxy-L-proline; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123), Metridin-like ShK toxin (InterPro:IPR003582); BEST Arabidopsis thaliana protein match is: Oxoglutarate/iron-dependent oxygenase (TAIR:AT3G28490.1); Has 2540 Blast hits to 2497 proteins in 339 species: Archae - 0; Bacteria - 391; Metazoa - 1089; Fungi - 70; Plants - 415; Viruses - 17; Other Eukaryotes - 558 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G28480-MONOMERBioCyc:ARA:GQT-1338-MONOMERBRENDA:1.14.11.2EC:1.14.11.2
EMBL:AB026644EMBL:AY065036EMBL:AY088608EMBL:BT001114
EMBL:CP002686EnsemblPlants:AT3G28480EnsemblPlants:AT3G28480.1entrez:822478
ExpressionAtlas:Q8L970GeneID:822478Genevisible:Q8L970GO:GO:0004656
GO:GO:0005506GO:GO:0005789GO:GO:0016021GO:GO:0031418
hmmpanther:PTHR10869hmmpanther:PTHR10869:SF55HOGENOM:HOG000096858InterPro:IPR003582
InterPro:IPR005123InterPro:IPR006620Pfam:PF01549Pfam:PF03171
Pfam:PF13640Pfam:Q8L970Pfscan:PS51471Pfscan:PS51670
PhylomeDB:Q8L970PRIDE:Q8L970PRO:PR:Q8L970PROSITE:PS51471
PROSITE:PS51670ProteinModelPortal:Q8L970Proteomes:UP000006548RefSeq:NP_566838.1
SMART:SM00254SMART:SM00702SMR:Q8L970TAIR:AT3G28480
TMHMM:TMhelixUniGene:At.28279UniProt:Q8L970
Coordinates (TAIR10) chr3:-:10676266..10678262
Molecular Weight (calculated) 35571.90 Da
IEP (calculated) 6.77
GRAVY (calculated) -0.51
Length 316 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSRIFLAFS LCFLFTLPLI SSAPNRFLTR SSNTRDGSVI KMKTSASSFG FDPTRVTQLS WTPRVFLYEG FLSDEECDHF IKLAKGKLEK SMVADNDSGE
101: SVESEVRTSS GMFLSKRQDD IVSNVEAKLA AWTFLPEENG ESMQILHYEN GQKYEPHFDY FHDQANLELG GHRIATVLMY LSNVEKGGET VFPMWKGKAT
201: QLKDDSWTEC AKQGYAVKPR KGDALLFFNL HPNATTDSNS LHGSCPVVEG EKWSATRWIH VKSFERAFNK QSGCMDENVS CEKWAKAGEC QKNPTYMVGS
301: DKDHGYCRKS CKACSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)