AT3G45620.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.322 golgi 0.308 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G35140.1); Has 13791 Blast hits to 9610 proteins in 511 species: Archae - 16; Bacteria - 3055; Metazoa - 4466; Fungi - 3147; Plants - 1303; Viruses - 0; Other Eukaryotes - 1804 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:16745918..16747993 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54022.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.16 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||
| Length | 481 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MARPRRRNTE IGDGFTEIFN REIGFSHPIT ISRRISASEG RVKKLDLYGK LNGHEGCVNA VEFNSTGDVL VSGSDDRQIM LWNWLSGSRK LSYPSGHCEN 101: VFQTKFIPFT DDRTIITSGA DGQVRLGQIL ENGKVETKRL GRHHGRVYKL AVLPGDPNVF YSCGEDGFVQ HFDIRSNSAT MVLYSSPFTQ GCRRHHSSSR 201: IRLNSIAIDP RNSYYLAVGG SDEYARVYDT RRVQLAPVCR HVLPDAPVNT FCPRHLRETN SVHITGLAYS KAGELLVSYN DELIYLFEKN MGYGSSPVSV 301: SPEKLQEMEE PQVYIGHRNA QTVKGVNFFG PNDEYVTSGS DCGHIFIWKK KGGKLVRAMV GDRRVVNQLE SHPHIPLLAS CGIEKSVKLW TPMSNDVLSL 401: PEKIDKVMEL NRVGREDQSR VTLTPDVIMH VLRLQRRQTS AFTERRYVST DIGSDEGNDA RFIASLVAND DESSDRECTV S |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)