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AT3G12600.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nudix hydrolase homolog 16
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nudix hydrolase homolog 16 (NUDT16); FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase, conserved site (InterPro:IPR020084), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 12 (TAIR:AT1G12880.1); Has 1169 Blast hits to 1168 proteins in 345 species: Archae - 0; Bacteria - 470; Metazoa - 236; Fungi - 123; Plants - 235; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G12600-MONOMERBioCyc:ARA:GQT-186-MONOMEREC:3.6.1.-eggNOG:COG0494
eggNOG:KOG2839EMBL:AC069474EMBL:AF325001EMBL:AF372914
EMBL:AP002044EMBL:BT002659EMBL:CP002686EnsemblPlants:AT3G12600
EnsemblPlants:AT3G12600.1entrez:820440Gene3D:3.90.79.10GeneID:820440
Genevisible:Q9LHK1GO:GO:0005739GO:GO:0016787GO:GO:0046872
hmmpanther:PTHR12629hmmpanther:PTHR12629:SF9HOGENOM:HOG000165198InParanoid:Q9LHK1
InterPro:IPR000086InterPro:IPR015797InterPro:IPR020084KEGG:ath:AT3G12600
OMA:WHDKWSRPaxDb:Q9LHK1Pfam:PF00293Pfam:Q9LHK1
Pfscan:PS51462PhylomeDB:Q9LHK1PRIDE:Q9LHK1PRO:PR:Q9LHK1
PROSITE:PS00893PROSITE:PS51462ProteinModelPortal:Q9LHK1Proteomes:UP000006548
RefSeq:NP_001078142.1RefSeq:NP_566428.1scanprosite:PS00893SMR:Q9LHK1
STRING:3702.AT3G12600.1SUPFAM:SSF55811TAIR:AT3G12600tair10-symbols:atnudt16
tair10-symbols:NUDT16UniGene:At.20911UniProt:Q9LHK1
Coordinates (TAIR10) chr3:+:4004809..4005995
Molecular Weight (calculated) 20393.10 Da
IEP (calculated) 5.17
GRAVY (calculated) -0.57
Length 180 amino acids
Sequence (TAIR10)
(BLAST)
001: MCDLVARTGR LQQRYEDGSR LVAGCIPFRY VNSDKDGNSE SGKVIQVLMI SSSSGPGLLF PKGGWENDET VREAAAREAV EEAGVRGILM DFLGNYEFKS
101: KSHQDEFSPE GLCKAAMYAL YVKEELATWP EHETRTRKWL TIEEAVESCR HPWMKDALVE GFCKWHKEKM VKGEEITGEH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)