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AT5G60860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.527
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RAB GTPase homolog A1F
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAB GTPase homolog A1F (RABA1f); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1G (TAIR:AT3G15060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21451eggNOG:COG1100eggNOG:KOG0087EMBL:AB015472
EMBL:AK118670EMBL:BT005238EMBL:CP002688EnsemblPlants:AT5G60860
EnsemblPlants:AT5G60860.1entrez:836207Gene3D:3.40.50.300GeneID:836207
Genevisible:Q9FJH0GO:GO:0005525GO:GO:0005622GO:GO:0005886
GO:GO:0007264GO:GO:0015031Gramene:AT5G60860.1hmmpanther:PTHR24073
hmmpanther:PTHR24073:SF553HOGENOM:HOG000233968IntAct:Q9FJH0InterPro:IPR001806
InterPro:IPR005225InterPro:IPR027417iPTMnet:Q9FJH0KEGG:ath:AT5G60860
OMA:KVGCCSNPaxDb:Q9FJH0Pfam:PF00071Pfam:Q9FJH0
Pfscan:PS51419PhylomeDB:Q9FJH0PRIDE:Q9FJH0PRO:PR:Q9FJH0
PROSITE:PS51419ProteinModelPortal:Q9FJH0Proteomes:UP000006548Reactome:R-ATH-5620916
RefSeq:NP_200894.1SMR:Q9FJH0STRING:3702.AT5G60860.1SUPFAM:SSF52540
TAIR:AT5G60860tair10-symbols:AtRABA1ftair10-symbols:RABA1fTIGRfam:TIGR00231
TIGRFAMs:TIGR00231UniGene:At.29139UniGene:At.50545UniProt:Q9FJH0
Coordinates (TAIR10) chr5:+:24484750..24485565
Molecular Weight (calculated) 24277.70 Da
IEP (calculated) 5.74
GRAVY (calculated) -0.25
Length 217 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAYRADDEY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIHVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)