AT1G63260.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 0.989 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : tetraspanin10 | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Member of TETRASPANIN family | ||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
tetraspanin10 (TET10); INVOLVED IN: aging; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499), Tetraspanin, subgroup (InterPro:IPR000301); BEST Arabidopsis thaliana protein match is: tetraspanin3 (TAIR:AT3G45600.1); Has 817 Blast hits to 814 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 379; Fungi - 0; Plants - 422; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:23467105..23468945 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 31920.50 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.72 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.35 | ||||||||||||||||||||||||||||||||||||||||
Length | 284 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGMGTSTFVI RWVNLLTMLL AVAVIIFGVW MSTHNDGCRR SLTFPVIALG GFIFLISIIG FLGACKRSVA LLWIYLAVLL IVLIAILVFT VLAFIVTNNG 101: SGHTNPGLRY KEYKLNDYSS WFLKQLNNTS NWIRLKSCLV KSEQCRKLSK KYKTIKQLKS AELTPIEAGC CRPPSECGYP AVNASYYDLS FHSISSNKDC 201: KLYKNLRTIK CYNCDSCKAG VAQYMKTEWR LVAIFNVVLF VVLISSLLST RFDSEQSFGL LNGLVQISNI TFKDCQTTTV PKQF |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)