AT5G38860.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : BES1-interacting Myc-like protein 3 | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
BES1-interacting Myc-like protein 3 (BIM3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BES1-interacting Myc-like protein 2 (TAIR:AT1G69010.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:15559083..15560911 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 33952.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.60 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.85 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 298 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MNSHDIDDQL EADVYSNLPS RNDSSTGRRN RNSCRSKHSE TEQRRRSKIN ERFQSLMDII PQNQNDQKRD KASFLLEVIE YIHFLQEKVH MYEDSHQMWY 101: QSPTKLIPWR NSHGSVAEEN DHPQIVKSFS SNDKVAASSG FLLDTYNSVN PDIDSAVSTK IPEHSPVSAV SSYLRTEPSL QFVQHDFWQP KTSCGTINCF 201: TNELLTSDEK TSASLSTVCS QRVLNTLTEA LKSSGVNMSE TMISVQLSLR KREDREYSVA AFASEDNGNS IADEEGDSPT ETRSFCNDID HSQKRIRR |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)