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AT1G24230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.560
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Paired amphipathic helix (PAH2) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Paired amphipathic helix (PAH2) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: Paired amphipathic helix (PAH2) superfamily protein (TAIR:AT1G23810.1); Has 1242 Blast hits to 659 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 390; Fungi - 362; Plants - 421; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).
Protein Annotations
DNASU:839037eggNOG:COG5602eggNOG:KOG4204EMBL:BT031359
EMBL:CP002684EnsemblPlants:AT1G24230EnsemblPlants:AT1G24230.1entrez:839037
Gene3D:1.20.1160.11GeneID:839037GO:GO:0006355Gramene:AT1G24230.1
hmmpanther:PTHR12346InterPro:IPR003822KEGG:ath:AT1G24230Pfam:PF02671
Pfscan:PS51477PhylomeDB:B2GVM8PROSITE:PS51477Proteomes:UP000006548
RefSeq:NP_173833.1SMR:B2GVM8STRING:3702.AT1G24230.1SUPFAM:SSF47762
TAIR:AT1G24230UniGene:At.49912UniProt:B2GVM8
Coordinates (TAIR10) chr1:-:8584039..8585135
Molecular Weight (calculated) 27794.10 Da
IEP (calculated) 6.70
GRAVY (calculated) -0.35
Length 245 amino acids
Sequence (TAIR10)
(BLAST)
001: MVGGSLSPAF TIDEATSYIN AVKEAFGADQ PAKYREFLDI MLDLRANRVD LATVVPRMRE LLKDHVNLLL RFNAFLPAEA KETFHDVRSY IYSLKESFRD
101: EPAKYAQFLE ILNDYSARRV DAPSAVARMT ELMKDHRNLV LGFSVLLSTG DTKTTPLEAE PDNNKRIRVA NFISKLKARF QGNDGHVYES FLEILTMYQQ
201: GNKSVNDLYQ EVVALLQGHE DLVMEFSNVF KRTTGPSGSK SARDR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)