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AT5G28300.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Duplicated homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Duplicated homeodomain-like superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT1G76890.2); Has 7371 Blast hits to 5463 proteins in 307 species: Archae - 4; Bacteria - 202; Metazoa - 744; Fungi - 303; Plants - 759; Viruses - 16; Other Eukaryotes - 5343 (source: NCBI BLink).
Protein Annotations
BioGrid:18187eggNOG:ENOG410YYXYeggNOG:KOG4282EMBL:AF296835
EMBL:AF386963EMBL:AK227285EMBL:AY081484EMBL:BT000461
EMBL:BT008389EMBL:CP002688EnsemblPlants:AT5G28300EnsemblPlants:AT5G28300.1
entrez:832914GeneID:832914Genevisible:Q8H181GO:GO:0001158
GO:GO:0003700GO:GO:0005516GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0045893Gramene:AT5G28300.1hmmpanther:PTHR21654
hmmpanther:PTHR21654:SF22HOGENOM:HOG000090988InParanoid:Q8H181InterPro:IPR017877
KEGG:ath:AT5G28300ncoils:CoilOMA:FHQFIASPaxDb:Q8H181
Pfam:PF13837Pfam:Q8H181Pfscan:PS50090PhylomeDB:Q8H181
PRIDE:Q8H181PRO:PR:Q8H181PROSITE:PS50090ProteinModelPortal:Q8H181
Proteomes:UP000006548RefSeq:NP_568506.2SMR:Q8H181STRING:3702.AT5G28300.1
TAIR:AT5G28300UniGene:At.19292UniProt:Q8H181
Coordinates (TAIR10) chr5:-:10292789..10295101
Molecular Weight (calculated) 71283.90 Da
IEP (calculated) 7.24
GRAVY (calculated) -1.14
Length 619 amino acids
Sequence (TAIR10)
(BLAST)
001: MFDGGVPEQI HRFIASPPPP PPLPPHQPAA ERSLPFPVSF SSFNTNHQPQ HMLSLDSRKI IHHHHHHHHH DIKDGGATTG EWIGQTDHDD SDNHHQHHHH
101: HPWCSDEVLA LLRFRSTVEN WFPEFTWEHT SRKLAEVGFK RSPQECKEKF EEEERRYFNS NNNNNNNTND HQHIGNYNNK GNNYRIFSEV EEFYHHGHDN
201: EHVSSEVGDN QNKRTNLVEG KGNVGETVQD LMAEDKLRDQ DQGQVEEASM ENQRNSIEVG KVGNVEDDAK SSSSSSLMMI MKEKKRKKRK KEKERFGVLK
301: GFCEGLVRNM IAQQEEMHKK LLEDMVKKEE EKIAREEAWK KQEIERVNKE VEIRAQEQAM ASDRNTNIIK FISKFTDHDL DVVQNPTSPS QDSSSLALRK
401: TQGRRKFQTS SSLLPQTLTP HNLLTIDKSL EPFSTKTLKP KNQNPKPPKS DDKSDLGKRW PKDEVLALIN IRRSISNMND DDHKDENSLS TSSKAVPLWE
501: RISKKMLEIG YKRSAKRCKE KWENINKYFR KTKDVNKKRP LDSRTCPYFH QLTALYSQPP TGTTATTATT ATSARDLDTR PEENRVGSQD PDISVPMHVD
601: GDGAGDKSNV QFSGFDLEF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)