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AT2G02080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : indeterminate(ID)-domain 4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
indeterminate(ID)-domain 4 (IDD4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT1G14580.2); Has 51298 Blast hits to 20221 proteins in 333 species: Archae - 2; Bacteria - 165; Metazoa - 48118; Fungi - 358; Plants - 855; Viruses - 7; Other Eukaryotes - 1793 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5048eggNOG:KOG1721EMBL:AC005936EMBL:AK117733
EMBL:BT005897EMBL:CP002685EnsemblPlants:AT2G02080EnsemblPlants:AT2G02080.1
EnsemblPlants:AT2G02080.2entrez:814739ExpressionAtlas:Q8GYC1Gene3D:3.30.160.60
GeneID:814739Genevisible:Q8GYC1GO:GO:0003677GO:GO:0003700
GO:GO:0006351GO:GO:0009507GO:GO:0046872hmmpanther:PTHR10593
hmmpanther:PTHR10593:SF38HOGENOM:HOG000237608InParanoid:Q8GYC1InterPro:IPR007087
InterPro:IPR013087InterPro:IPR015880iPTMnet:Q8GYC1KEGG:ath:AT2G02080
OMA:GRIMENDPaxDb:Q8GYC1Pfam:PF13912Pfam:Q8GYC1
Pfscan:PS50157PhylomeDB:Q8GYC1PIR:G84432PRIDE:Q8GYC1
PRO:PR:Q8GYC1PROSITE:PS00028PROSITE:PS50157ProteinModelPortal:Q8GYC1
Proteomes:UP000006548RefSeq:NP_001118254.1RefSeq:NP_178317.2scanprosite:PS00028
SMART:SM00355SMR:Q8GYC1STRING:3702.AT2G02080.1SUPFAM:SSF57667
TAIR:AT2G02080tair10-symbols:AtIDD4tair10-symbols:IDD4UniGene:At.13357
UniProt:Q8GYC1
Coordinates (TAIR10) chr2:-:518328..521170
Molecular Weight (calculated) 55797.00 Da
IEP (calculated) 9.65
GRAVY (calculated) -0.65
Length 516 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSSYNTSV IPSSSSSAQP FFITSSGTGD NDFNRKDTFM SMIQQPNSSA PPPKKRRNQP GNPNPDAEVV ALSPKTLMAT NRFICDVCNK GFQREQNLQL
101: HRRGHNLPWK LKQKSTKEVK RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY YRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTKEYRCDC GTIFSRRDSY
201: ITHRAFCDAL IQETARNPTV SFTSMTAASS GVGSGGIYGR LGGGSALSHH HLSDHPNFGF NPLVGYNLNI ASSDNRRDFI PQSSNPNFLI QSASSQGMLN
301: TTPNNNNQSF MNQHGLIQFD PVDNINLKSS GTNNSFFNLG FFQENTKNSE TSLPSLYSTD VLVHHREENL NAGSNVSATA LLQKATQMGS VTSNDPSALF
401: RGLASSSNSS SVIANHFGGG RIMENDNNGN LQGLMNSLAA VNGGGGSGGS IFDVQFGDNG NMSGSDKLTL DFLGVGGMVR NVNRGGGGGG RGSARGGVSL
501: DGEAKFPEQN YPFGRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)