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AT1G14580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : C2H2-like zinc finger protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
C2H2-like zinc finger protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, LP.02 two leaves visible, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 4 (TAIR:AT2G02080.1); Has 50611 Blast hits to 19416 proteins in 277 species: Archae - 0; Bacteria - 3; Metazoa - 47960; Fungi - 322; Plants - 829; Viruses - 2; Other Eukaryotes - 1495 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5048eggNOG:KOG1721EMBL:AC010657EMBL:AY091041
EMBL:AY133766EMBL:CP002684EnsemblPlants:AT1G14580EnsemblPlants:AT1G14580.1
EnsemblPlants:AT1G14580.2entrez:838020Gene3D:3.30.160.60GeneID:838020
Genevisible:Q8RWX7GO:GO:0003677GO:GO:0003700GO:GO:0006351
GO:GO:0009507GO:GO:0046872Gramene:AT1G14580.1Gramene:AT1G14580.2
hmmpanther:PTHR10593hmmpanther:PTHR10593:SF38HOGENOM:HOG000237608InParanoid:Q8RWX7
InterPro:IPR007087InterPro:IPR013087InterPro:IPR015880iPTMnet:Q8RWX7
KEGG:ath:AT1G14580OMA:NFLMQCSPaxDb:Q8RWX7Pfam:Q8RWX7
Pfscan:PS50157PhylomeDB:Q8RWX7PRIDE:Q8RWX7PRO:PR:Q8RWX7
PROSITE:PS00028PROSITE:PS50157ProteinModelPortal:Q8RWX7Proteomes:UP000006548
RefSeq:NP_001184994.1RefSeq:NP_172910.2scanprosite:PS00028SMART:SM00355
SMR:Q8RWX7STRING:3702.AT1G14580.1SUPFAM:SSF57667TAIR:AT1G14580
UniGene:At.24519UniProt:Q8RWX7
Coordinates (TAIR10) chr1:+:4990070..4992442
Molecular Weight (calculated) 50639.10 Da
IEP (calculated) 9.48
GRAVY (calculated) -0.67
Length 467 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSYNTIAL SSTPTFLLSS AAAGPGPNNF NRQEAAMTMV QQQPTSSVAP PPKKRRNQPG NPNPDAEVIA LSPKTIMATN RFLCEVCNKG FQREQNLQLH
101: RRGHNLPWKL KQKSNKEVRR KVYLCPEPSC VHHDPARALG DLTGIKKHYY RKHGEKKWKC DKCSKRYAVQ SDWKAHSKTC GTKEYRCDCG TIFSRRDSYI
201: THRAFCDALI QESARNPTVS FTAMAAGGGG GARHGFYGGA SSALSHNHFG NNPNSGFTPL AAAGYNLNRS SSDKFEDFVP QATNPNPGPT NFLMQCSPNQ
301: GLLAQNNQSL MNHHGLISLG DNNNNNHNFF NLAYFQDTKN SDQTGVPSLF TNGADNNGPS ALLRGLTSSS SSSVVVNDFG DCDHGNLQGL MNSLAATTDQ
401: QGRSPSLFDL HFANNLSMGG SDRLTLDFLG VNGGIVSTVN GRGGRSGGPP LDAEMKFSHP NHPYGKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)