AT1G17970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/U-box superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G73760.1); Has 8802 Blast hits to 8789 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 2364; Fungi - 695; Plants - 4341; Viruses - 10; Other Eukaryotes - 1392 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:6185032..6187202 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41620.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.57 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||||||
| Length | 368 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSTTIGEHI RLRRARNQTI RHLHAADDDP PLSHVVLPIS QPNRFCNSAM SSFFPLPTSS SNESTRKKPY QTSSFRGMGC YAAAAAAAQE VSVPSVIRYS 101: ADLDARIRKD KKKKKHKHKK KKKKNKGSYE DGSIRILSEE ARDVIDVWCR PGLGFSTDAV IGRSVDPPRG RNIPSSRRKI DVDNNNYNHT LGSSVLPIRF 201: LNQETHSHDI FNSDSTFVTS SRAEPTMLSS RCRGHLPRSY PDDLTEMRML QNGFVMGRIT DSRDNYHELR LDVDSMSYEQ LLELGDRIGY VNTGLKESEI 301: HRCLGKIKPS VSHTLVDRKC SICQDEYERE DEVGELNCGH SFHVHCVKQW LSRKNACPVC KKAAYGKP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)