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AT3G45260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : C2H2-like zinc finger protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
C2H2-like zinc finger protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT5G60470.1); Has 54288 Blast hits to 20581 proteins in 284 species: Archae - 0; Bacteria - 7; Metazoa - 49362; Fungi - 343; Plants - 724; Viruses - 2; Other Eukaryotes - 3850 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5048eggNOG:KOG1721EMBL:AF428302EMBL:AJ621493
EMBL:AL132953EMBL:AY143936EMBL:CP002686EnsemblPlants:AT3G45260
EnsemblPlants:AT3G45260.1entrez:823664Gene3D:3.30.160.60GeneID:823664
Genevisible:Q944L3GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0046872Gramene:AT3G45260.1
hmmpanther:PTHR10593hmmpanther:PTHR10593:SF45HOGENOM:HOG000237608InParanoid:Q944L3
InterPro:IPR007087InterPro:IPR013087InterPro:IPR015880InterPro:IPR022755
iPTMnet:Q944L3KEGG:ath:AT3G45260OMA:GQSSHQWPaxDb:Q944L3
Pfam:PF12171Pfam:Q944L3Pfscan:PS50157PhylomeDB:Q944L3
PIR:T47466PRIDE:Q944L3PRO:PR:Q944L3PROSITE:PS00028
PROSITE:PS50157ProteinModelPortal:Q944L3Proteomes:UP000006548RefSeq:NP_566877.1
scanprosite:PS00028SMART:SM00355SMR:Q944L3STRING:3702.AT3G45260.1
SUPFAM:SSF57667TAIR:AT3G45260UniGene:At.22283UniProt:Q944L3
Coordinates (TAIR10) chr3:-:16596850..16598550
Molecular Weight (calculated) 49943.40 Da
IEP (calculated) 9.85
GRAVY (calculated) -0.90
Length 446 amino acids
Sequence (TAIR10)
(BLAST)
001: MMMPDDHHPL SFPSYVLHQE HIAPNPNPNP NPTSSNSAKR KRNLPGNPDP DAEVIALSPN SLMTTNRFIC EVCNKGFKRD QNLQLHRRGH NLPWKLKQRT
101: NKEQVKKKVY ICPEKTCVHH DPARALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVMSDW KAHSKICGTK EYRCDCGTLF SRKDSFITHR AFCDALAEES
201: ARFVSVPPAP AYLNNALDVE VNHGNINQNH QQRQLNTTSS QLDQPGFNTN RNNIAFLGQT LPTNVFASSS SPSPRSASDS LQNLWHLQGQ SSHQWLLNEN
301: NNNNNNILQR GISKNQEEHE MKNVISNGSL FSSEARNNTN NYNQNGGQIA SMSATALLQK AAQMGSKRSS SSSSNSKTFG LMTSIFNNKQ AENIKTKEVD
401: ERGFTRDFLG VGSQHRSWPL LMVNHNLPDS SPPASTDGTP TADMNQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)