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AT3G50700.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : indeterminate(ID)-domain 2
Curator
Summary (TAIR10)
zinc finger protein, similar to maize Indeterminate1 (ID1)
Computational
Description (TAIR10)
indeterminate(ID)-domain 2 (IDD2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT5G66730.1); Has 54862 Blast hits to 20312 proteins in 388 species: Archae - 0; Bacteria - 661; Metazoa - 50262; Fungi - 473; Plants - 881; Viruses - 5; Other Eukaryotes - 2580 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5048eggNOG:KOG1721EMBL:AK226933EMBL:AL132979
EMBL:BT014947EMBL:BT015836EMBL:CP002686EnsemblPlants:AT3G50700
EnsemblPlants:AT3G50700.1entrez:824234Gene3D:3.30.160.60GeneID:824234
Genevisible:Q9SCQ6GO:GO:0003677GO:GO:0003700GO:GO:0006351
GO:GO:0006355GO:GO:0046872Gramene:AT3G50700.1hmmpanther:PTHR10593
hmmpanther:PTHR10593:SF31HOGENOM:HOG000237608InParanoid:Q9SCQ6InterPro:IPR007087
InterPro:IPR013087InterPro:IPR015880InterPro:IPR022755iPTMnet:Q9SCQ6
KEGG:ath:AT3G50700OMA:ENARSHHPaxDb:Q9SCQ6Pfam:PF12171
Pfam:Q9SCQ6Pfscan:PS50157PhylomeDB:Q9SCQ6PIR:T46147
PRIDE:Q9SCQ6PRO:PR:Q9SCQ6PROSITE:PS00028PROSITE:PS50157
ProteinModelPortal:Q9SCQ6Proteomes:UP000006548RefSeq:NP_190639.1scanprosite:PS00028
SMART:SM00355SMR:Q9SCQ6STRING:3702.AT3G50700.1SUPFAM:SSF57667
TAIR:AT3G50700tair10-symbols:AtIDD2tair10-symbols:IDD2UniGene:At.27643
UniGene:At.50264UniProt:Q9SCQ6
Coordinates (TAIR10) chr3:+:18840945..18842829
Molecular Weight (calculated) 47945.80 Da
IEP (calculated) 9.95
GRAVY (calculated) -0.46
Length 452 amino acids
Sequence (TAIR10)
(BLAST)
001: MPVDLDNSST VSGEASVSIS STGNQNPLPN STGKKKRNLP GMPDPESEVI ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQKSNKEVK
101: KKVYVCPEVS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTKEYKCDC GTLFSRRDSF ITHRAFCDAL AEENARSHHS
201: QSKKQNPEIL TRKNPVPNPV PAPVDTESAK IKSSSTLTIK QSESPKTPPE IVQEAPKPTS LNVVTSNGVF AGLFESSSAS PSIYTTSSSS KSLFASSSSI
301: EPISLGLSTS HGSSFLGSNR FHAQPAMSAT ALLQKAAQMG AASSGGSLLH GLGIVSSTST SIDAIVPHGL GLGLPCGGES SSGLKELMMG NSSVFGPKQT
401: TLDFLGLGRA VGNGNGPSNG LSTLVGGGTG IDMATTFGSG EFSGKDISRR KS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)