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AT2G29970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:24872594 (2014): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G07200.2); Has 10913 Blast hits to 10488 proteins in 2533 species: Archae - 15; Bacteria - 9122; Metazoa - 6; Fungi - 149; Plants - 525; Viruses - 0; Other Eukaryotes - 1096 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0542eggNOG:KOG1051EMBL:AC004680EMBL:AY039922
EMBL:CP002685EnsemblPlants:AT2G29970EnsemblPlants:AT2G29970.1entrez:817547
Gene3D:1.10.1780.10Gene3D:3.40.50.300GeneID:817547GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0019538Gramene:AT2G29970.1
hmmpanther:PTHR11638hmmpanther:PTHR11638:SF68HOGENOM:HOG000085182InterPro:IPR004176
InterPro:IPR027417iPTMnet:O80875KEGG:ath:AT2G29970OMA:CISRAAH
PaxDb:O80875PaxDb:Q94BS5PhylomeDB:O80875PIR:T02488
PRIDE:Q94BS5ProteinModelPortal:O80875Proteomes:UP000006548RefSeq:NP_565689.1
STRING:3702.AT2G29970.1SUPFAM:SSF52540TAIR:AT2G29970UniGene:At.22058
UniProt:O80875
Coordinates (TAIR10) chr2:+:12776601..12779784
Molecular Weight (calculated) 111930.00 Da
IEP (calculated) 7.17
GRAVY (calculated) -0.34
Length 1002 amino acids
Sequence (TAIR10)
(BLAST)
0001: MPTPVTTARQ CLTEETARAL DDAVSVARRR SHAQTTSLHA VSGLLTMPSS ILREVCISRA AHNTPYSSRL QFRALELCVG VSLDRLPSSK STPTTTVEED
0101: PPVSNSLMAA IKRSQATQRR HPETYHLHQI HGNNNTETTS VLKVELKYFI LSILDDPIVS RVFGEAGFRS TDIKLDVLHP PVTSQFSSRF TSRSRIPPLF
0201: LCNLPESDSG RVRFGFPFGD LDENCRRIGE VLARKDKKNP LLVGVCGVEA LKTFTDSINR GKFGFLPLEI SGLSVVSIKI SEVLVDGSRI DIKFDDLGRL
0301: KSGMVLNLGE LKVLASDVFS VDVIEKFVLK LADLLKLHRE KLWFIGSVSS NETYLKLIER FPTIDKDWNL HLLPITSSSQ GLYPKSSLMG SFVPFGGFFS
0401: STSDFRIPSS SSMNQTLPRC HLCNEKYEQE VTAFAKSGSM IDDQCSEKLP SWLRNVEHEH EKGNLGKVKD DPNVLASRIP ALQKKWDDIC QRIHQTPAFP
0501: KLSFQPVRPQ FPLQLGSSSQ TKMSLGSPTE KIVCTRTSES FQGMVALPQN PPHQPGLSVK ISKPKHTEDL SSSTTNSPLS FVTTDLGLGT IYASKNQEPS
0601: TPVSVERRDF EVIKEKQLLS ASRYCKDFKS LRELLSRKVG FQNEAVNAIS EIVCGYRDES RRRNNHVATT SNVWLALLGP DKAGKKKVAL ALAEVFCGGQ
0701: DNFICVDFKS QDSLDDRFRG KTVVDYIAGE VARRADSVVF IENVEKAEFP DQIRLSEAMR TGKLRDSHGR EISMKNVIVV ATISGSDKAS DCHVLEEPVK
0801: YSEERVLNAK NWTLQIKLAD TSNVNKNGPN KRRQEEAETE VTELRALKSQ RSFLDLNLPV DEIEANEDEA YTMSENTEAW LEDFVEQVDG KVTFKLIDFD
0901: ELAKNIKRNI LSLFHLSFGP ETHLEIENDV ILKILAALRW SSDEEKTFDQ WLQTVLAPSF AKARQKCVPA APFSVKLVAS RESPAEEETT GIQQFPARVE
1001: VI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)