AT1G07200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.820 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (mitochondrial marker)
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G29970.1); Has 14609 Blast hits to 14609 proteins in 2753 species: Archae - 17; Bacteria - 11747; Metazoa - 78; Fungi - 268; Plants - 440; Viruses - 0; Other Eukaryotes - 2059 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:2209033..2210301 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47044.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.72 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||
| Length | 422 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEDLTASVTN RTVSLPLSCV TTDFGLGVIY ASKNQESKTT REKPMLVTLN SSLEHTYQKD FKSLREILSR KVAWQTEAVN AISQIICGCK TDSTRRNQAS 101: GIWLALLGPD KVGKKKVAMT LSEVFFGGKV NYICVDFGAE HCSLDDKFRG KTVVDYVTGE LSRKPHSVVL LENVEKAEFP DQMRLSEAVS TGKIRDLHGR 201: VISMKNVIVV VTSGIAKDNA TDHVIKPVKF PEEQVLSARS WKLQIKLGDA TKFGVNKRKY ELETAQRAVK VQRSYLDLNL PVNETEFSPD HEAEDRDAWF 301: DEFIEKVDGK VTFKPVDFDE LAKNIQEKIG SHFERCFGSE THLELDKEVI LQILAASWSS LSSGEEEGRT IVDQWMQTVL ARSFAEAKQK YGSNPMLGVK 401: LVASSSGLAS GVELPAKVDV IW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)