suba logo
AT4G37790.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Homeobox-leucine zipper protein family
Curator
Summary (TAIR10)
Encodes homeobox protein HAT22, member of the HD-Zip II family.
Computational
Description (TAIR10)
HAT22; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, response to cytokinin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper protein family (TAIR:AT2G22800.1); Has 6652 Blast hits to 6630 proteins in 455 species: Archae - 0; Bacteria - 0; Metazoa - 4237; Fungi - 277; Plants - 2018; Viruses - 3; Other Eukaryotes - 117 (source: NCBI BLink).
Protein Annotations
BioGrid:15216eggNOG:ENOG410Z2UEeggNOG:KOG0483EMBL:AJ441254
EMBL:AL035709EMBL:AL161592EMBL:AY087563EMBL:BT002318
EMBL:CP002687EMBL:M90417EMBL:U09336EMBL:U09337
EnsemblPlants:AT4G37790EnsemblPlants:AT4G37790.1entrez:829935Gene3D:1.10.10.60
GeneID:829935Genevisible:P46604GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009735GO:GO:0043565Gramene:AT4G37790.1
hmmpanther:PTHR24326hmmpanther:PTHR24326:SF252HOGENOM:HOG000241612InParanoid:P46604
IntAct:P46604InterPro:IPR001356InterPro:IPR003106InterPro:IPR009057
InterPro:IPR017970iPTMnet:P46604KEGG:ath:AT4G37790KO:K09338
ncoils:CoilOMA:GAGDQICPaxDb:P46604Pfam:P46604
Pfam:PF00046Pfam:PF02183Pfscan:PS50071PhylomeDB:P46604
PIR:T06026PRIDE:P46604PRO:PR:P46604PROSITE:PS00027
PROSITE:PS50071ProteinModelPortal:P46604Proteomes:UP000006548RefSeq:NP_195493.1
scanprosite:PS00027SMART:SM00340SMART:SM00389SMR:P46604
STRING:3702.AT4G37790.1SUPFAM:SSF46689TAIR:AT4G37790tair10-symbols:HAT22
UniGene:At.23912UniProt:P46604
Coordinates (TAIR10) chr4:+:17768241..17769272
Molecular Weight (calculated) 30731.30 Da
IEP (calculated) 8.15
GRAVY (calculated) -0.68
Length 278 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLDDSCNTG LVLGLGLSPT PNNYNHAIKK SSSTVDHRFI RLDPSLTLSL SGESYKIKTG AGAGDQICRQ TSSHSGISSF SSGRVKRERE ISGGDGEEEA
101: EETTERVVCS RVSDDHDDEE GVSARKKLRL TKQQSALLED NFKLHSTLNP KQKQALARQL NLRPRQVEVW FQNRRARTKL KQTEVDCEFL KKCCETLTDE
201: NRRLQKELQD LKALKLSQPF YMHMPAATLT MCPSCERLGG GGVGGDTTAV DEETAKGAFS IVTKPRFYNP FTNPSAAC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)