suba logo
AT5G13180.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NAC domain containing protein 83
Curator
Summary (TAIR10)
Encodes a NAC domain transcription factor that interacts with VND7 and negatively regulates xylem vessel formation.
Computational
Description (TAIR10)
NAC domain containing protein 83 (NAC083); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 41 (TAIR:AT2G33480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK0NeggNOG:ENOG410YED8EMBL:AF385734EMBL:AL391711
EMBL:AY143964EMBL:CP002688EnsemblPlants:AT5G13180EnsemblPlants:AT5G13180.1
entrez:831157GeneID:831157Genevisible:Q9FY93GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009651
GO:GO:0009737GO:GO:0010089GO:GO:0010150GO:GO:0016032
GO:GO:0045892Gramene:AT5G13180.1hmmpanther:PTHR31989HOGENOM:HOG000237406
InParanoid:Q9FY93IntAct:Q9FY93InterPro:IPR003441KEGG:ath:AT5G13180
OMA:RAGNKNDPaxDb:Q9FY93Pfam:PF02365Pfscan:PS51005
PhylomeDB:Q9FY93PRIDE:Q9FY93PRO:PR:Q9FY93PROSITE:PS51005
ProteinModelPortal:Q9FY93Proteomes:UP000006548RefSeq:NP_196822.1SMR:Q9FY93
STRING:3702.AT5G13180.1SUPFAM:SSF101941TAIR:AT5G13180tair10-symbols:ANAC083
tair10-symbols:NAC083tair10-symbols:VNI2UniGene:At.10079UniProt:Q9FY93
Coordinates (TAIR10) chr5:+:4196643..4197577
Molecular Weight (calculated) 28571.40 Da
IEP (calculated) 9.14
GRAVY (calculated) -0.84
Length 252 amino acids
Sequence (TAIR10)
(BLAST)
001: MDNVKLVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVCSSP LPASIIPEFD VCRADPWDLP GNLEKERYFF STREAKYPNG NRSNRATGSG YWKATGIDKR
101: VVTSRGNQIV GLKKTLVFYK GKPPHGSRTD WIMHEYRLSS SPPSSMGPTQ NWVLCRIFLK KRAGNKNDDD DGDSRNLRHN NNNNSSDQIE IITTDQTDDK
201: TKPIFFDFMR KERTTDLNLL PSSPSSDHAS SGVTTEIFSS SDEETSSCNS FR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)