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AT3G07870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21533090 (2011): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box and associated interaction domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G23880.1); Has 2008 Blast hits to 1989 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2006; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IF3AeggNOG:ENOG410YVBUEMBL:AC013483EMBL:AF424614
EMBL:BT025979EMBL:CP002686EnsemblPlants:AT3G07870EnsemblPlants:AT3G07870.1
entrez:819978GeneID:819978Genevisible:Q9SFC7GO:GO:0009506
Gramene:AT3G07870.1hmmpanther:PTHR31790hmmpanther:PTHR31790:SF18HOGENOM:HOG000090481
InParanoid:Q9SFC7InterPro:IPR001810InterPro:IPR013187InterPro:IPR017451
KEGG:ath:AT3G07870OMA:EQFREVPPaxDb:Q9SFC7Pfam:PF00646
Pfam:PF08268Pfam:Q9SFC7Pfscan:PS50181PhylomeDB:Q9SFC7
PRIDE:Q9SFC7PRO:PR:Q9SFC7PROSITE:PS50181ProteinModelPortal:Q9SFC7
Proteomes:UP000006548RefSeq:NP_566322.1SMART:SM00256SMR:Q9SFC7
SUPFAM:SSF81383TAIR:AT3G07870TIGRfam:TIGR01640TIGRFAMs:TIGR01640
UniGene:At.25406UniProt:Q9SFC7
Coordinates (TAIR10) chr3:+:2510871..2512124
Molecular Weight (calculated) 47684.40 Da
IEP (calculated) 9.33
GRAVY (calculated) -0.35
Length 417 amino acids
Sequence (TAIR10)
(BLAST)
001: MASEKSFKKR KITDDVDGVG VGGGLESLPE DIIADIFSRL PISSIARLMF VCRSWRSVLT QHGRLSSSSS SPTKPCLLLH CDSPIRNGLH FLDLSEEEKR
101: IKTKKFTLRF ASSMPEFDVV GSCNGLLCLS DSLYNDSLYL YNPFTTNSLE LPECSNKYHD QELVFGFGFH EMTKEYKVLK IVYFRGSSSN NNGIYRGRGR
201: IQYKQSEVQI LTLSSKTTDQ SLSWRSLGKA PYKFVKRSSE ALVNGRLHFV TRPRRHVPDR KFVSFDLEDE EFKEIPKPDC GGLNRTNHRL VNLKGCLCAV
301: VYGNYGKLDI WVMKTYGVKE SWGKEYSIGT YLPKGLKQNL DRPMWIWKNA ENGKVVRVLC LLENGEILLE YKSRVLVAYD PKLGKFKDLL FHGLPNWFHT
401: VVHAGTLSWF DTPLDLW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)