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AT1G55530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G13430.3); Has 11045 Blast hits to 10950 proteins in 292 species: Archae - 0; Bacteria - 8; Metazoa - 3210; Fungi - 1082; Plants - 5106; Viruses - 41; Other Eukaryotes - 1598 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AC005223EMBL:AF424578
EMBL:AY039608EMBL:BT000502EMBL:CP002684EnsemblPlants:AT1G55530
EnsemblPlants:AT1G55530.1entrez:842000Gene3D:3.30.40.10GeneID:842000
GO:GO:0008270Gramene:AT1G55530.1hmmpanther:PTHR22763hmmpanther:PTHR22763:SF59
HOGENOM:HOG000237766InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT1G55530
KO:K11982ncoils:CoilOMA:RANNSLWPfam:PF13639
Pfam:PF14369Pfscan:PS50089PhylomeDB:Q9ZVU8PIR:F96597
PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_564693.1SMART:SM00184
SMR:Q9ZVU8STRING:3702.AT1G55530.1SUPFAM:SSF57850TAIR:AT1G55530
UniGene:At.19898UniProt:Q9ZVU8
Coordinates (TAIR10) chr1:-:20729472..20730527
Molecular Weight (calculated) 38965.20 Da
IEP (calculated) 3.97
GRAVY (calculated) -0.78
Length 351 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)