AT5G05100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Single-stranded nucleic acid binding R3H protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Single-stranded nucleic acid binding R3H protein; FUNCTIONS IN: nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Single-stranded nucleic acid binding R3H (InterPro:IPR001374); BEST Arabidopsis thaliana protein match is: Single-stranded nucleic acid binding R3H protein (TAIR:AT3G10770.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:1505461..1506940 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36551.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.59 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.76 | ||||||||||||||||||||||||||||||||||||
| Length | 324 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAMSDKEAM VDPFLVEALQ NPRHRLTILR MELDIQKFFQ SPEQQQYEFQ PLPTSYLRLI AHRVAQHYGL FTTALEGGGV DGSGNRILAT KTVESRYPYV 101: CLSEIPVKQP EIHGRPEGFK IAIKPRPNRG AGGSGSGSGV EKNLLRSVEE RKEEYDKARA RIFNSPSSSD SEDSSTRAPP PPYPRLDSKH NTACPSRNET 201: EVVVNYNSNP VDVERNGVIR DSGRTSRVAI IRDREKDRYD PDYDRNRYVR VAPPVQNFNP IPIPLPFHDA IFPQMPRTQA SLNYGHPLNP AMTAPSYTEW 301: PSATMTYAQT LNASDVHHFR HPNP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)