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AT3G52060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.882
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT5G22070.1); Has 568 Blast hits to 568 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 545; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IE81eggNOG:ENOG410YDIXEMBL:AF360303EMBL:AF370610
EMBL:AK228713EMBL:AL049711EMBL:AY051067EMBL:BT002508
EMBL:BT008736EMBL:CP002686EnsemblPlants:AT3G52060EnsemblPlants:AT3G52060.1
EnsemblPlants:AT3G52060.2entrez:824369GeneID:824369GO:GO:0008375
GO:GO:0009506GO:GO:0016020GO:GO:0016757Gramene:AT3G52060.1
Gramene:AT3G52060.2hmmpanther:PTHR31042hmmpanther:PTHR31042:SF18HOGENOM:HOG000237469
InterPro:IPR003406KEGG:ath:AT3G52060OMA:FLIAPRIPfam:PF02485
PhylomeDB:Q9SUZ8PIR:T49085Proteomes:UP000006548RefSeq:NP_190774.1
RefSeq:NP_850681.1STRING:3702.AT3G52060.1TAIR:AT3G52060TMHMM:TMhelix
UniGene:At.24115UniGene:At.75208UniProt:Q9SUZ8
Coordinates (TAIR10) chr3:-:19310987..19312027
Molecular Weight (calculated) 39519.10 Da
IEP (calculated) 6.72
GRAVY (calculated) -0.04
Length 346 amino acids
Sequence (TAIR10)
(BLAST)
001: MFSSSTLVYS LSLFLSLSLL FFLFILSPHI LLSSSTLIST ADDLDDLSLF HRAVVSSSTN NNRRLISLSP NPPPKIAFLF LTNSDLTFLP LWESFFQGHQ
101: DLYNVYIHAD PTSSVSPLLD SSSINAKFIP ARRTARASPT LISAERRLLA NAILDDPNNL YFALISQHCI PLHSFSYIHN HLFSDHHQQS FIEILSDEPF
201: LLKRYNARGD DAMLPEIQYQ DFRVGSQFFV LAKRHALMVI KERKLWRKFK LPCLDVESCY PEEHYFPTLL SLEDPQGCSH FTLTRVNWTG SVGGHPHTYD
301: ASEISPQLIH SLRRSNSSLD YFFARKFTPE SLQPLMEIAD AVIFRD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)