suba logo
AT5G56550.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : oxidative stress 3
Curator
Summary (TAIR10)
Encodes OXIDATIVE STRESS 3 (OXS3), involved in tolerance to heavy metals and oxidative stress.
Computational
Description (TAIR10)
OXIDATIVE STRESS 3 (OXS3); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26288.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0724eggNOG:KOG4210EMBL:AB019234EMBL:AK175485
EMBL:AK176596EMBL:CP002688EnsemblPlants:AT5G56550EnsemblPlants:AT5G56550.1
entrez:835756GeneID:835756GO:GO:0006979GO:GO:0016607
GO:GO:0046686Gramene:AT5G56550.1hmmpanther:PTHR33172hmmpanther:PTHR33172:SF2
HOGENOM:HOG000153140KEGG:ath:AT5G56550OMA:TETFFEEPhylomeDB:Q9LVB9
Proteomes:UP000006548RefSeq:NP_200466.1STRING:3702.AT5G56550.1TAIR:AT5G56550
tair10-symbols:ATOXS3tair10-symbols:OXS3UniGene:At.63908UniProt:Q9LVB9
Coordinates (TAIR10) chr5:-:22895847..22896502
Molecular Weight (calculated) 19308.50 Da
IEP (calculated) 5.85
GRAVY (calculated) -0.87
Length 172 amino acids
Sequence (TAIR10)
(BLAST)
001: MFKEMNLNLK QMGNMIYEDP TRIQEEEDIV QEVSTTFSDE EDNSSSCSLS SSMCSDFTED DDDDDVSSSS SNGPLEDLSD LMSHLPIKRG LSKFYEGKSQ
101: SFTSLGNVKS LEDLMKRGFK SRNYGAKRKS SRSTGGILDQ SYKRVFSPKA TISKKPNRTP SSVLSCLARR RH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)