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AT1G30130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.759
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1365 (InterPro:IPR010775); Has 1789 Blast hits to 1789 proteins in 449 species: Archae - 0; Bacteria - 824; Metazoa - 0; Fungi - 6; Plants - 39; Viruses - 0; Other Eukaryotes - 920 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3496eggNOG:ENOG410II4TEMBL:AC074176EMBL:AK317070
EMBL:CP002684EnsemblPlants:AT1G30130EnsemblPlants:AT1G30130.1EnsemblPlants:AT1G30130.2
entrez:839892GeneID:839892GO:GO:0016021Gramene:AT1G30130.1
Gramene:AT1G30130.2hmmpanther:PTHR33973hmmpanther:PTHR33973:SF1InterPro:IPR010775
KEGG:ath:AT1G30130OMA:IWIYWHAPfam:PF07103PhylomeDB:Q9C6Z4
PIR:D86425Proteomes:UP000006548RefSeq:NP_564348.1RefSeq:NP_973939.1
STRING:3702.AT1G30130.1TAIR:AT1G30130TMHMM:TMhelixUniGene:At.27858
UniProt:Q9C6Z4
Coordinates (TAIR10) chr1:+:10587666..10589222
Molecular Weight (calculated) 35774.60 Da
IEP (calculated) 8.56
GRAVY (calculated) -0.25
Length 311 amino acids
Sequence (TAIR10)
(BLAST)
001: MELLFLLCSI IYTSITSIFF SLLLPFRFLL HRLLPSRAAV DPNVSFYEGT VWHDRLRPVR HSFRYSVRYA LFDLDKAINT PPDHFSADEA RRVSRTTGPI
101: FLLTIPPSVG YEQNPLSLYY CYDLEGSSKR LSKCIAQVTN TPWGERVTFV FDPESDLVAK SLQVSPFMDM LGNWKIRANE PGDDLSVSIA SQHPHFGNYF
201: SATLKAKRIP LSRVSDPAVF FWLMPHKVAI WIYWHALQLW WKSVPFIQHP RYSNPSYREE AAKRDQELRC PGLDGSDSDK TNKFDGLKGD GCSSSFGGCR
301: FAWRDANWPW S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)