AT3G16350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Homeodomain-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Zinc finger, CCHC-type (InterPro:IPR001878), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb-like transcription factor family protein (TAIR:AT5G47390.1); Has 2847 Blast hits to 2586 proteins in 268 species: Archae - 0; Bacteria - 117; Metazoa - 791; Fungi - 88; Plants - 1494; Viruses - 13; Other Eukaryotes - 344 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:5547828..5549397 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41193.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.20 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 387 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTRRCSHCSN NGHNSRTCPT RGGGTCGGSG GGGGGGGGGG SGSSSAVKLF GVRLTDGSII KKSASMGNLS ALAVAAAAAT HHRLSPSSPL ATSNLNDSPL 101: SDHARYSNLH HNEGYLSDDP AHGSGSSHRR GERKRGVPWT EEEHRLFLVG LQKLGKGDWR GISRNYVTSR TPTQVASHAQ KYFIRHTSSS RRKRRSSLFD 201: MVTDEMVTDS SPTQEEQTLN GSSPSKEPEK KSYLPSLELS LNNTTEAEEV VATAPRQEKS QEAIEPSNGV SPMLVPGGFF PPCFPVTYTI WLPASLHGTE 301: HALNAETSSQ QHQVLKPKPG FAKERVNMDE LVGMSQLSIG MATRHETETS PSPLSLRLEP SRPSAFHSNG SVNGADLSKG NSAIQAI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)