AT1G07150.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : mitogen-activated protein kinase kinase kinase 13 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of MEKK subfamily | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
mitogen-activated protein kinase kinase kinase 13 (MAPKKK13); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: mitogen-activated protein kinase kinase kinase 14 (TAIR:AT2G30040.1); Has 115480 Blast hits to 114239 proteins in 3527 species: Archae - 169; Bacteria - 12227; Metazoa - 43932; Fungi - 11802; Plants - 28183; Viruses - 583; Other Eukaryotes - 18584 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:2194279..2195778 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55560.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.05 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 499 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEKQSIRNTC SSSLMLSSPS SFWVRGACIG RGCFGAVSTA ISKTNGEVFA VKSVDLATSL PTQSESLENE ISVFRSLKPH PYIVKFLGDG VSKEGTTTFR 101: NLYLEYLPNG DVASHRAGGK IEDETLLQRY TACLVSALRH VHSQGFVHCD VKARNILVSQ SSMVKLADFG SAFRIHTPRA LITPRGSPLW MAPEVIRREY 201: QGPESDVWSL GCTIIEMFTG KPAWEDHGID SLSRISFSDE LPVFPSKLSE IGRDFLEKCL KRDPNQRWSC DQLLQHPFLS QCHNSSPTES SPRCVLDWVN 301: SGFDLEEEEE EVGRSEFEDA AKAIICNLAT TGGVIWESDG WVEVRCHASE EEGTTMEYSG STRVESEYNT SSDPNDDVAG DSAIIDVSMS QNLPPGNGGS 401: AAALPYEFVV VLHLLMEIMV YTTCIFREIV LTMYLLYQYN QSNKLETLSF NHSLKFCLFA HVIRIGQNYL LRGEMRSSVL ITSHCLILIT LVYSQIVVF |
||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)