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AT5G52250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.857
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Encodes a transducin protein whose gene expression is induced by UV-B. This induction is reduced in hy5 mutant and may be a target of HY5 during UV-B response.
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G23730.1); Has 19305 Blast hits to 12811 proteins in 562 species: Archae - 16; Bacteria - 3753; Metazoa - 6674; Fungi - 4562; Plants - 2007; Viruses - 0; Other Eukaryotes - 2293 (source: NCBI BLink).
Protein Annotations
BioGrid:20546DIP:DIP-60744NeggNOG:ENOG410IMQDeggNOG:ENOG4111PED
EMBL:AB025603EMBL:AK228112EMBL:AY087205EMBL:BT003150
EMBL:CP002688EnsemblPlants:AT5G52250EnsemblPlants:AT5G52250.1entrez:835301
Gene3D:2.130.10.10GeneID:835301Genevisible:Q9LTJ6GO:GO:0005634
GO:GO:0005829GO:GO:0009908GO:GO:0010114GO:GO:0010218
GO:GO:0010224GO:GO:0043496GO:GO:0080008Gramene:AT5G52250.1
hmmpanther:PTHR22847hmmpanther:PTHR22847:SF430HOGENOM:HOG000238730InParanoid:Q9LTJ6
InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986iPTMnet:Q9LTJ6
KEGG:ath:AT5G52250KO:K10143OMA:CADRNAYPaxDb:Q9LTJ6
Pfam:PF00400Pfam:Q9LTJ6Pfscan:PS50082Pfscan:PS50294
PhylomeDB:Q9LTJ6PRIDE:Q9LTJ6PRO:PR:Q9LTJ6PROSITE:PS50082
PROSITE:PS50294ProteinModelPortal:Q9LTJ6Proteomes:UP000006548RefSeq:NP_200038.1
SMART:SM00320SMR:Q9LTJ6STRING:3702.AT5G52250.1SUPFAM:SSF50978
TAIR:AT5G52250tair10-symbols:RUP1UniGene:At.29626UniProt:Q9LTJ6
Coordinates (TAIR10) chr5:+:21216898..21218055
Molecular Weight (calculated) 41998.80 Da
IEP (calculated) 4.83
GRAVY (calculated) -0.30
Length 385 amino acids
Sequence (TAIR10)
(BLAST)
001: MEALFCSEIP NNNIRSSIND LSSSSSYTWP MIMTSSSSSS SSPTIMNIEN IPRCDWDLSL SAVVSSASTG SDAIGAIEFD PTGEIIATGG IARKIRSYRL
101: SSLLESRDDH VTASESYICT PAKLSSLKWR PDFSGRVIGS GDYDGVVTEY DVEKQVPVSE RDEHGGRRIW SVDYTLYNGS LIGASGSDDG TVQMWDPRNG
201: GTLEETVRPG GGAAICSVEF DPFGGSSIAV GCADRNAYVY DIRRLVDPLI VLDGHTKTVT YARFMDSHTI VTGSTDGSLK QWDIDNGRRV VRTYRGHVNS
301: RNFVGLSVWR HGGLVVSGSE NNQVFVYDKR WEEPVWVCGL GHTNRFGSDR RFVSSVCLRQ VDEDWCTLVA GGSDGALEIF SGKQS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)