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AT1G12240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23737500 (2013): plant-type vacuole
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24344820 (2014): Golgi trans-Golgi network
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Glycosyl hydrolases family 32 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATBETAFRUCT4; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, beta-fructofuranosidase activity; INVOLVED IN: sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process; LOCATED IN: vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3357 (InterPro:IPR021792), Glycoside hydrolase, family 32 (InterPro:IPR001362), Glycoside hydrolase, family 32, active site (InterPro:IPR018053), Glycosyl hydrolases family 32, N-terminal (InterPro:IPR013148), Glycosyl hydrolase family 32, C-terminal (InterPro:IPR013189), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolases family 32 protein (TAIR:AT1G62660.1); Has 4142 Blast hits to 4085 proteins in 1233 species: Archae - 18; Bacteria - 2511; Metazoa - 93; Fungi - 293; Plants - 1044; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G12240-MONOMERBioGrid:23017CAZy:GH32EC:3.2.1.26
eggNOG:COG1621eggNOG:KOG0228EMBL:AC022522EMBL:AK118459
EMBL:AY046009EMBL:AY142666EMBL:CP002684EMBL:X97749
EMBL:Y11559EnsemblPlants:AT1G12240EnsemblPlants:AT1G12240.1entrez:837777
Gene3D:2.115.10.20Gene3D:2.60.120.560GeneID:837777Genevisible:Q39041
GO:GO:0000325GO:GO:0004564GO:GO:0004575GO:GO:0005773
GO:GO:0005985GO:GO:0009505GO:GO:0009617GO:GO:0009738
GO:GO:0071370GO:GO:0080022Gramene:AT1G12240.1gramene_pathway:3.2.1.26
gramene_pathway:PWY-621gramene_plant_reactome:1119360gramene_plant_reactome:6874597hmmpanther:PTHR31953
hmmpanther:PTHR31953:SF17HOGENOM:HOG000181427InParanoid:Q39041IntAct:Q39041
InterPro:IPR001362InterPro:IPR013148InterPro:IPR013189InterPro:IPR013320
InterPro:IPR018053InterPro:IPR021792InterPro:IPR023296iPTMnet:Q39041
KEGG:00052+3.2.1.26KEGG:00500+3.2.1.26KEGG:ath:AT1G12240KO:K01193
OMA:LADEGRCPaxDb:Q39041Pfam:PF00251Pfam:PF08244
Pfam:PF11837Pfam:Q39041PhylomeDB:Q39041PIR:E86257
PIR:S71276PRIDE:Q39041PRO:PR:Q39041PROSITE:PS00609
ProteinModelPortal:Q39041Proteomes:UP000006548RefSeq:NP_563901.1scanprosite:PS00609
SMART:SM00640SMR:Q39041STRING:3702.AT1G12240.1SUPFAM:SSF49899
SUPFAM:SSF75005TAIR:AT1G12240tair10-symbols:ATBETAFRUCT4tair10-symbols:VAC-INV
TMHMM:TMhelixUniGene:At.24440UniPathway:UPA00238UniProt:Q39041
Coordinates (TAIR10) chr1:+:4153699..4157457
Molecular Weight (calculated) 73847.90 Da
IEP (calculated) 5.30
GRAVY (calculated) -0.28
Length 664 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSDALLPI SAREEEPLCP YTRLPMADPN QETHGPRRRR PFKGLLAVSF GLLFIAFYVA LIATHDGSRS NDEGIDETET ITSRARLAGV SEKRNDGLWK
101: LSGDRNTPAF EWNNSMLSWQ RTAFHFQPEQ NWMNDPNGPL FYKGWYHFFY QYNPNAAVWG DIVWGHAVSR DLIHWVHLPI AMVADQWYDS NGVWTGSATF
201: LPDGSIVMLY TGSTDKAVQV QNLAYPEDPN DPLLLKWVKF PGNPVLVPPP GILPKDFRDP TTAWKTSEGK WRITIGSKLN KTGISLVYDT IDFKTYEKLD
301: TLLHRVPNTG MWECVDFYPV SKTAGNGLDT SVNGPDVKHI VKASMDDTRF DHYAVGTYFD SNGTWIPDDP TIDVGMTASL RYDYGKFYAS KSFYDQNKGR
401: RVLWSWIGES DSEASDVQKG WSSLQGIPRT VVLDTKTGKN LVQWPVEEIK SLRLSSKQFD LEVGPGSVVP VDVGSAAQLD IEAEFEINKE SLDKIIGNAS
501: VVAEAEEFSC EKSGGSTVRG ALGPFGFSVL ATESLSEQTP VYFYVAKGKD SELKTFFCTD TSRSSVANDV VKPIYGSVVP VLKGEKLTMR ILVDHSIVEA
601: FGQGGRTCIT SRVYPTTAIY GAAKLFLFNN ALDATVTASF TVWQMNSAFI HPYSDEAVRA LSRT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)