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AT4G26150.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cytokinin-responsive gata factor 1
Curator
Summary (TAIR10)
Encodes a member of the GATA factor family of zinc finger transcription factors.
Computational
Description (TAIR10)
cytokinin-responsive gata factor 1 (CGA1); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT5G56860.1); Has 1630 Blast hits to 1587 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 659; Plants - 751; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5641eggNOG:KOG1601EMBL:AL049483EMBL:AL161564
EMBL:CP002687EnsemblPlants:AT4G26150EnsemblPlants:AT4G26150.1entrez:828721
Gene3D:3.30.50.10GeneID:828721Genevisible:Q9SZI6GO:GO:0000977
GO:GO:0001085GO:GO:0001228GO:GO:0003682GO:GO:0003700
GO:GO:0005634GO:GO:0005667GO:GO:0006366GO:GO:0007623
GO:GO:0008270GO:GO:0009416GO:GO:0009735GO:GO:0009740
GO:GO:0009910GO:GO:0010187GO:GO:0010380GO:GO:0010468
GO:GO:0030154GO:GO:0044212GO:GO:0045944Gramene:AT4G26150.1
hmmpanther:PTHR10071hmmpanther:PTHR10071:SF191HOGENOM:HOG000238913InParanoid:Q9SZI6
InterPro:IPR000679InterPro:IPR013088KEGG:ath:AT4G26150OMA:QNHQPFF
PaxDb:Q9SZI6Pfam:PF00320Pfam:Q9SZI6Pfscan:PS50114
PhylomeDB:Q9SZI6PIR:T04270PRIDE:Q9SZI6PRO:PR:Q9SZI6
PROSITE:PS00344PROSITE:PS50114ProteinModelPortal:Q9SZI6Proteomes:UP000006548
RefSeq:NP_194345.1scanprosite:PS00344SMART:SM00401SMR:Q9SZI6
STRING:3702.AT4G26150.1SUPFAM:SSF57716TAIR:AT4G26150tair10-symbols:CGA1
tair10-symbols:GATA22tair10-symbols:GNLUniGene:At.32205UniProt:Q9SZI6
Coordinates (TAIR10) chr4:+:13253210..13254659
Molecular Weight (calculated) 39347.50 Da
IEP (calculated) 9.59
GRAVY (calculated) -0.70
Length 352 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSNFHYTID LNEDQNHQPF FASLGSSLHH HLQQQQQQQQ HFHHQASSNP SSLMSPSLSY FPFLINSRQD QVYVGYNNNT FHDVLDTHIS QPLETKNFVS
101: DGGSSSSDQM VPKKETRLKL TIKKKDNHQD QTDLPQSPIK DMTGTNSLKW ISSKVRLMKK KKAIITTSDS SKQHTNNDQS SNLSNSERQN GYNNDCVIRI
201: CSDCNTTKTP LWRSGPRGPK SLCNACGIRQ RKARRAAMAT ATATAVSGVS PPVMKKKMQN KNKISNGVYK ILSPLPLKVN TCKRMITLEE TALAEDLETQ
301: SNSTMLSSSD NIYFDDLALL LSKSSAYQQV FPQDEKEAAI LLMALSHGMV HG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)