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AT4G23750.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cytokinin response factor 2
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Monopteros target gene.
Computational
Description (TAIR10)
cytokinin response factor 2 (CRF2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 1 (TAIR:AT4G11140.1); Has 5899 Blast hits to 5717 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 2; Plants - 5881; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
BioGrid:13764eggNOG:ENOG410IXMIeggNOG:ENOG410YM3EEMBL:AL035394
EMBL:AL161560EMBL:AY057475EMBL:AY140049EMBL:BT015038
EMBL:CP002687EnsemblPlants:AT4G23750EnsemblPlants:AT4G23750.1EnsemblPlants:AT4G23750.2
entrez:828475Gene3D:3.30.730.10GeneID:828475Genevisible:Q9SUQ2
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0005737
GO:GO:0006351GO:GO:0009736GO:GO:0009873GO:GO:0042802
GO:GO:0042991GO:GO:0048364GO:GO:0048825Gramene:AT4G23750.1
Gramene:AT4G23750.2hmmpanther:PTHR31194hmmpanther:PTHR31194:SF16HOGENOM:HOG000237664
InParanoid:Q9SUQ2IntAct:Q9SUQ2InterPro:IPR001471InterPro:IPR016177
InterPro:IPR017392iPTMnet:Q9SUQ2KEGG:ath:AT4G23750OMA:PRIKFTE
PANTHER:PTHR31194PaxDb:Q9SUQ2Pfam:PF00847Pfam:Q9SUQ2
Pfscan:PS51032PhylomeDB:Q9SUQ2PIR:T05607PRIDE:Q9SUQ2
PRINTS:PR00367PRO:PR:Q9SUQ2PROSITE:PS51032ProteinModelPortal:Q9SUQ2
Proteomes:UP000006548RefSeq:NP_194106.1RefSeq:NP_974599.1SMART:SM00380
SMR:Q9SUQ2STRING:3702.AT4G23750.1SUPFAM:SSF54171TAIR:AT4G23750
tair10-symbols:CRF2tair10-symbols:TMO3UniGene:At.26323UniGene:At.67317
UniProt:Q9SUQ2
Coordinates (TAIR10) chr4:+:12376751..12377782
Molecular Weight (calculated) 37874.40 Da
IEP (calculated) 6.68
GRAVY (calculated) -0.50
Length 343 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAEKKMVLP RIKFTEHKTN TTTIVSELTN THQTRILRIS VTDPDATDSS SDDEEEEHQR FVSKRRRVKK FVNEVYLDSG AVVTGSCGQM ESKKRQKRAV
101: KSESTVSPVV SATTTTTGEK KFRGVRQRPW GKWAAEIRDP LKRVRLWLGT YNTAEEAAMV YDNAAIQLRG PDALTNFSVT PTTATEKKAP PPSPVKKKKK
201: KNNKSKKSVT ASSSISRSSS NDCLCSPVSV LRSPFAVDEF SGISSSPVAA VVVKEEPSMT TVSETFSDFS APLFSDDDVF DFRSSVVPDY LGGDLFGEDL
301: FTADMCTDMN FGFDFGSGLS SWHMEDHFQD IGDLFGSDPL LAV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)