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AT5G67440.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phototropic-responsive NPH3 family protein
Curator
Summary (TAIR10)
A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.
Computational
Description (TAIR10)
NAKED PINS IN YUC MUTANTS 3 (NPY3); FUNCTIONS IN: signal transducer activity; INVOLVED IN: flower development, response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT4G37590.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JX3JeggNOG:ENOG41104BVEMBL:AB007645EMBL:AY054694
EMBL:AY128721EMBL:CP002688EnsemblPlants:AT5G67440EnsemblPlants:AT5G67440.1
entrez:836880ExpressionAtlas:Q9FN09GeneID:836880Genevisible:Q9FN09
GO:GO:0009908GO:GO:0009958GO:GO:0016567GO:GO:0071944
hmmpanther:PTHR32370hmmpanther:PTHR32370:SF26HOGENOM:HOG000239180InParanoid:Q9FN09
InterPro:IPR000210InterPro:IPR011333InterPro:IPR027356OMA:IFSKLWT
PaxDb:Q9FN09Pfam:PF00651Pfam:PF03000Pfam:Q9FN09
Pfscan:PS50097Pfscan:PS51649PhylomeDB:Q9FN09PRIDE:Q9FN09
PRO:PR:Q9FN09PROSITE:PS50097PROSITE:PS51649ProteinModelPortal:Q9FN09
Proteomes:UP000006548RefSeq:NP_201545.1STRING:3702.AT5G67440.1SUPFAM:SSF54695
TAIR:AT5G67440tair10-symbols:NPY3UniGene:At.19960UniPathway:UPA00143
UniProt:Q9FN09
Coordinates (TAIR10) chr5:-:26912947..26914906
Molecular Weight (calculated) 64768.70 Da
IEP (calculated) 4.85
GRAVY (calculated) -0.40
Length 579 amino acids
Sequence (TAIR10)
(BLAST)
001: MKFMKLGSKP DSFQSDEDCV RYVATELATD VVVIVGDVKF HLHKFPLLSK SARLQKLIAT TTTDEQSDDD EIRIPDIPGG PPAFEICAKF CYGMAVTLNA
101: YNVVAVRCAA EYLEMYESIE NGNLVYKMEV FLNSSVLRSW KDSIIVLQTT RSFYPWSEDV KLDVRCLESI ALKAAMDPAR VDWSYTYNRR KLLPPEMNNN
201: SVPRDWWVED LAELSIDLFK RVVSTIRRKG GVLPEVIGEA LEVYAAKRIP GFMIQNDDND DEEDVMEQRS LLETLVSMLP SEKQSVSCGF LIKLLKSSVS
301: FECGEEERKE LSRRIGEKLE EANVGDLLIR APEGGETVYD IDIVETLIDE FVTQTEKRDE LDCSDDINDS SKANVAKLID GYLAEISRIE TNLSTTKFIT
401: IAEKVSTFPR QSHDGVYRAI DMFLKQHPGI TKSEKKSSSK LMDCRKLSPE ACAHAVQNER LPLRVVVQIL FFEQVRATTK PSLPPSGSHG SSRTTTEEEC
501: ESVTATEETT TTTRDKTSSS EKTKAKGVVM SRIFSKLWTG KDKDGVGDVS SSDTSESPGS VTTVGDKSTP STRRRRSSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)