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AT1G68580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: RNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Bromo adjacent homology (BAH) domain (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT5G55600.3); Has 202 Blast hits to 186 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 195; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II9HeggNOG:ENOG410YG0ZEMBL:CP002684EnsemblPlants:AT1G68580
EnsemblPlants:AT1G68580.1entrez:843187ExpressionAtlas:F4HXB8GeneID:843187
GO:GO:0003682Gramene:AT1G68580.1hmmpanther:PTHR31917hmmpanther:PTHR31917:SF9
InterPro:IPR001025InterPro:IPR008395InterPro:IPR014002ncoils:Coil
PaxDb:F4HXB8Pfam:PF01426Pfam:PF05641Pfscan:PS51038
PhylomeDB:F4HXB8PRIDE:F4HXB8PROSITE:PS51038ProteinModelPortal:F4HXB8
Proteomes:UP000006548RefSeq:NP_849862.2SMART:SM00439SMART:SM00743
TAIR:AT1G68580UniGene:At.47248UniProt:F4HXB8
Coordinates (TAIR10) chr1:+:25753582..25755059
Molecular Weight (calculated) 45425.40 Da
IEP (calculated) 7.78
GRAVY (calculated) -0.45
Length 396 amino acids
Sequence (TAIR10)
(BLAST)
001: MTEKDAGGFN MSTFMNRKFQ EPIQQIKTFS WMGFSWTCRK RRKHYQSYLR NGVRISVNDF VYVLAEQHKR LVAYIEDLYE DSKGKKMVVV RWFHKTEEVG
101: SVLSDDDNDR EIFFSLNRQD ISIECIDYLA TVLSPQHYEK FLKVPMHVQT VAFFCQKLYG DDGLKPYDIT QLEGYWRQEM LRYLNVSILK SFEGAQAPGT
201: DPGLKAPLVG CVGIRSRKRR RPSPVGTLNV SYAGDMKGDC KSSPDSVLAV TDASIFKGDE DGSSHHIKKG SLIEVLSEDS GIRGCWFKAL VLKKHKDKVK
301: VQYQDIQDAD DESKKLEEWI LTSRVAAGDH LGDLRIKGRK VVRPMLKPSK ENDVCVIGVG MPVDVWWCDG WWEGIVVQEV SEEKFEVYLP GELRHL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)