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AT2G42030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G58030.4); Has 5667 Blast hits to 5631 proteins in 406 species: Archae - 0; Bacteria - 6; Metazoa - 3361; Fungi - 638; Plants - 1015; Viruses - 19; Other Eukaryotes - 628 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111IHVeggNOG:KOG0823EMBL:AY058184EMBL:AY072117
EMBL:AY096666EMBL:CP002685EMBL:U90439EnsemblPlants:AT2G42030
EnsemblPlants:AT2G42030.1entrez:818803Gene3D:3.30.40.10GeneID:818803
GO:GO:0008270Gramene:AT2G42030.1hmmpanther:PTHR12313hmmpanther:PTHR12313:SF14
HOGENOM:HOG000090666InterPro:IPR001841InterPro:IPR013083InterPro:IPR017907
KEGG:ath:AT2G42030OMA:VSEAKECPfam:PF13920Pfscan:PS50089
PhylomeDB:P93744PIR:A84849PROSITE:PS00518PROSITE:PS50089
Proteomes:UP000006548RefSeq:NP_181733.1scanprosite:PS00518SMART:SM00184
SMR:P93744STRING:3702.AT2G42030.1SUPFAM:SSF57850TAIR:AT2G42030
UniGene:At.20315UniGene:At.74233UniProt:P93744
Coordinates (TAIR10) chr2:-:17539069..17540346
Molecular Weight (calculated) 47430.20 Da
IEP (calculated) 5.20
GRAVY (calculated) -0.68
Length 425 amino acids
Sequence (TAIR10)
(BLAST)
001: MGEEISSTVN LDLNLGPDPE LGLEPATNYA RSDWGNGLAA RESESLRRFR SRYRSRFRRI DMLPVLAETH SPAMELSQLL ITSGNVVALP AGEGSMASGE
101: RVIEDSKKCE NGSKVMAEDN VTEEKRDVEK SVGSDGSFFD CYICLDLSKD PVVTNCGHLY CWSCLYQWLQ VSEAKECPVC KGEVSVKTVT PIYGRGIQKR
201: ESEEVSNTKI PSRPQARRTE SLRTTLNRSG HIPTEIFRHL QDRLERESST GERRARPSLN RFMTSRGVRA EENQSSEALV EPSSDEINDI DLILNNAPEN
301: EEENENLSSS RALATQRRWA QMYGRVSSFT LSSAERLADT YLITHALGRN QEQNSSPPVG VEDRDSFSSI VGVINSESQV ETAAEINSML TVSTSSSVRR
401: HENSSRVSDV DSADSRPLRR RRRLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)