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AT2G32450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:24030099 (2013): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:20374526 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15308754 (2004): plasma membrane
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Calcium-binding tetratricopeptide family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-binding tetratricopeptide family protein; FUNCTIONS IN: binding, zinc ion binding, calcium ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), EF-HAND 2 (InterPro:IPR018249), Zinc finger, ZZ-type (InterPro:IPR000433), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Calcium-binding tetratricopeptide family protein (TAIR:AT1G05150.1); Has 35687 Blast hits to 16899 proteins in 1653 species: Archae - 1571; Bacteria - 18642; Metazoa - 4222; Fungi - 630; Plants - 961; Viruses - 0; Other Eukaryotes - 9661 (source: NCBI BLink).
Protein Annotations
BioGrid:3153eggNOG:ENOG410IQRBeggNOG:ENOG41102ANEMBL:AC005700
EMBL:BT004231EMBL:BT005684EMBL:CP002685EnsemblPlants:AT2G32450
EnsemblPlants:AT2G32450.1entrez:817806Gene3D:1.10.238.10Gene3D:1.25.40.10
GeneID:817806Genevisible:Q8S8L9GO:GO:0005509GO:GO:0005886
GO:GO:0008270GO:GO:0016757Gramene:AT2G32450.1hmmpanther:PTHR23083
hmmpanther:PTHR23083:SF380HOGENOM:HOG000239938InParanoid:Q8S8L9IntAct:Q8S8L9
InterPro:IPR002048InterPro:IPR011990InterPro:IPR011992InterPro:IPR013026
InterPro:IPR019734iPTMnet:Q8S8L9KEGG:ath:AT2G32450OMA:NEEGPFI
PaxDb:Q8S8L9Pfam:PF07719Pfam:PF13414Pfam:PF13424
Pfam:Q8S8L9Pfscan:PS50005Pfscan:PS50222Pfscan:PS50293
PhylomeDB:Q8S8L9PIR:C84733PIR:T02544PRIDE:Q8S8L9
PRO:PR:Q8S8L9PROSITE:PS50005PROSITE:PS50222PROSITE:PS50293
ProteinModelPortal:Q8S8L9Proteomes:UP000006548RefSeq:NP_180804.1SMART:SM00028
SMR:Q8S8L9STRING:3702.AT2G32450.1SUPFAM:SSF47473SUPFAM:SSF48452
TAIR:AT2G32450UniGene:At.38072UniProt:Q8S8L9
Coordinates (TAIR10) chr2:+:13778614..13781022
Molecular Weight (calculated) 90233.50 Da
IEP (calculated) 6.72
GRAVY (calculated) -0.41
Length 802 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTRGSRSEK VKRIFQQFDG NLDGGLSREE MSALVVAVNP RVKFSDEQIS AILDEVFRTY AEFIDGDKGL TFDGLLRTYD DGAGDVDRDF DALGIEFNEE
101: TKGASEASSS SITDERAVEA QKQQRTAAWA VSPNHGIVFD ETWKLVDDLE ILVKRLKSKQ EKDGKLKVDN NNVDAFSEAG WSRELGPSSD ISDKRIYWEE
201: SSHDYGVFVK ELGVLRSKAD GARSREEAFD GHMAIGKVLY EHQLFKEALV SFKRACELQP TDVRPHFKAG NCLYVLGKYK ESKDEFLLAL EAAESGGNQW
301: AYLLPQIYVN LGISLEGEGM VLSACEYYRE AAILCPTHYR ALKLLGSALF GVGEYRAAVK ALEEAIYLKP DYADAHCDLA SSLHAMGEDE RAIEVFQRAI
401: DLKPGHVDAL YNLGGLYMDL GRFQRASEMY TRVLAVWPNH WRAQLNKAVS LLGAGETEEA KRALKEALKM TNRVELHDAV SHLKQLQKKK KVKKGNSANE
501: EGPFIVVESS KFKTVGEKTT LRPDLAIALQ VRAFQRVTRL WKCDVEALRR EMRDNNVPVS YSGNGIPTKS IRRPNLEEIL RRLLNVLKPE TFQGAIKAIN
601: EKILSVLDDS GSGRVDLGMF YAVIAPLCGG HPDKRKRVAF DALLWKPVNE GSSQITKMEA VKYIKLLRAI YIPSQGMSEM LEVHGESDDT STVTFNQFLE
701: MYDDSEWGFG IMSTVFKLET RDRNRHGNQV CSVCRYPIIG SRFKEVKTGF SLCNQCYSEG KIPPTFKQQE EYKFREYASE VEAMKAKCVC FSMQSHKKTI
801: AT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)