AT2G32450.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Calcium-binding tetratricopeptide family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Calcium-binding tetratricopeptide family protein; FUNCTIONS IN: binding, zinc ion binding, calcium ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), EF-HAND 2 (InterPro:IPR018249), Zinc finger, ZZ-type (InterPro:IPR000433), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Calcium-binding tetratricopeptide family protein (TAIR:AT1G05150.1); Has 35687 Blast hits to 16899 proteins in 1653 species: Archae - 1571; Bacteria - 18642; Metazoa - 4222; Fungi - 630; Plants - 961; Viruses - 0; Other Eukaryotes - 9661 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:13778614..13781022 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 90233.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.72 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 802 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MTTRGSRSEK VKRIFQQFDG NLDGGLSREE MSALVVAVNP RVKFSDEQIS AILDEVFRTY AEFIDGDKGL TFDGLLRTYD DGAGDVDRDF DALGIEFNEE 101: TKGASEASSS SITDERAVEA QKQQRTAAWA VSPNHGIVFD ETWKLVDDLE ILVKRLKSKQ EKDGKLKVDN NNVDAFSEAG WSRELGPSSD ISDKRIYWEE 201: SSHDYGVFVK ELGVLRSKAD GARSREEAFD GHMAIGKVLY EHQLFKEALV SFKRACELQP TDVRPHFKAG NCLYVLGKYK ESKDEFLLAL EAAESGGNQW 301: AYLLPQIYVN LGISLEGEGM VLSACEYYRE AAILCPTHYR ALKLLGSALF GVGEYRAAVK ALEEAIYLKP DYADAHCDLA SSLHAMGEDE RAIEVFQRAI 401: DLKPGHVDAL YNLGGLYMDL GRFQRASEMY TRVLAVWPNH WRAQLNKAVS LLGAGETEEA KRALKEALKM TNRVELHDAV SHLKQLQKKK KVKKGNSANE 501: EGPFIVVESS KFKTVGEKTT LRPDLAIALQ VRAFQRVTRL WKCDVEALRR EMRDNNVPVS YSGNGIPTKS IRRPNLEEIL RRLLNVLKPE TFQGAIKAIN 601: EKILSVLDDS GSGRVDLGMF YAVIAPLCGG HPDKRKRVAF DALLWKPVNE GSSQITKMEA VKYIKLLRAI YIPSQGMSEM LEVHGESDDT STVTFNQFLE 701: MYDDSEWGFG IMSTVFKLET RDRNRHGNQV CSVCRYPIIG SRFKEVKTGF SLCNQCYSEG KIPPTFKQQE EYKFREYASE VEAMKAKCVC FSMQSHKKTI 801: AT |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)