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AT2G26770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : plectin-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
plectin-related; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40820.1); Has 4721 Blast hits to 4136 proteins in 536 species: Archae - 91; Bacteria - 672; Metazoa - 2162; Fungi - 328; Plants - 350; Viruses - 13; Other Eukaryotes - 1105 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKQJeggNOG:ENOG410XTBSEMBL:AC003105EMBL:AK118842
EMBL:AY136349EMBL:BT000193EMBL:CP002685EnsemblPlants:AT2G26770
EnsemblPlants:AT2G26770.1EnsemblPlants:AT2G26770.2entrez:817218GeneID:817218
Genevisible:O48791GO:GO:0003779GO:GO:0005737GO:GO:0005856
GO:GO:0007015GO:GO:0010119Gramene:AT2G26770.1Gramene:AT2G26770.2
hmmpanther:PTHR31172hmmpanther:PTHR31172:SF2HOGENOM:HOG000242482IntAct:O48791
InterPro:IPR032009InterPro:IPR032012InterPro:IPR032015KEGG:ath:AT2G26770
ncoils:CoilOMA:NYRIGANPaxDb:O48791PDB:4DIX
PDB:4DJGPDBsum:4DIXPDBsum:4DJGPfam:O48791
Pfam:PF16709Pfam:PF16711Pfam:PF16712PhylomeDB:O48791
PIR:F84664PRIDE:O48791PRO:PR:O48791ProteinModelPortal:O48791
Proteomes:UP000006548RefSeq:NP_180245.1RefSeq:NP_850085.1SMR:O48791
STRING:3702.AT2G26770.1TAIR:AT2G26770UniGene:At.38848UniProt:O48791
Coordinates (TAIR10) chr2:-:11404257..11407743
Molecular Weight (calculated) 55421.40 Da
IEP (calculated) 8.21
GRAVY (calculated) -0.46
Length 496 amino acids
Sequence (TAIR10)
(BLAST)
001: MTRVTRDFRD SLQRDGVPAV SADVKFASSR FPNYRIGAND QIFDVKDDPK VMSMKEVVAR ETAQLMDQQK RLSVRDLAHK FEKGLAAAAK LSEEAKLKEA
101: TSLEKHVLLK KLRDALESLR GRVAGRNKDD VEEAIAMVEA LAVQLTQREG ELFIEKAEVK KLASFLKQAS EDAKKLVDEE RAFARAEIES ARAAVQRVEE
201: ALREHEQMSR ASGKQDMEDL MKEVQEARRI KMLHQPSRVM DMEYELRALR NQLAEKSKHF LQLQKKLAMC RKSEENISLV YEIDGTEALG SCLRVRPCSN
301: DAPDLSKCTI QWYRSSSDGS KKELISGATK SVYAPEPFDV GRVLHADIIY DGHSLSLSTV GKIDPAAGLG SYVEALVRKH DVDFNVVVTQ MSGEDHTSES
401: IHLFHVGKMR IKLCKGKTVI AKEYYSSAMQ LCGVRGGGNA AAQALYWQAK KGVSFVIAFE SERERNAAIM LARRFACDCN VTLAGPEDRT ETGQSP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)