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AT3G49600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquitin-specific protease 26
Curator
Summary (TAIR10)
Encodes a ubiquitin-specific protease which catalyzes deubiquitination of histone H2B and is required for heterochromatin silencing.Loss of function mutations display autonomous endosperm development and embryo arrest. Loss of function also results in an increase in expression of the PcG complex target gene PHE1.
Computational
Description (TAIR10)
ubiquitin-specific protease 26 (UBP26); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: seed development; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin-specific peptidase, DUSP domain (InterPro:IPR006615), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 13 (TAIR:AT3G11910.1); Has 7210 Blast hits to 6677 proteins in 263 species: Archae - 0; Bacteria - 2; Metazoa - 3696; Fungi - 1305; Plants - 848; Viruses - 3; Other Eukaryotes - 1356 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G49600-MONOMEREC:3.4.19.12eggNOG:COG5077eggNOG:KOG1863
EMBL:AF302674EMBL:AL132964EMBL:CP002686EnsemblPlants:AT3G49600
EnsemblPlants:AT3G49600.1entrez:824122Gene3D:3.30.2230.10GeneID:824122
Genevisible:Q9SCJ9GO:GO:0004843GO:GO:0005730GO:GO:0006511
GO:GO:0016579GO:GO:0048316Gramene:AT3G49600.1hmmpanther:PTHR24006
HOGENOM:HOG000090485InParanoid:Q9SCJ9InterPro:IPR000626InterPro:IPR001394
InterPro:IPR006615InterPro:IPR018200InterPro:IPR028889InterPro:IPR029071
iPTMnet:Q9SCJ9KEGG:ath:AT3G49600KO:K11858MEROPS:C19.068
OMA:HPGQKYYPaxDb:Q9SCJ9Pfam:PF00443Pfam:Q9SCJ9
Pfscan:PS50053Pfscan:PS50235Pfscan:PS51283PIR:T46237
PRIDE:Q9SCJ9PRO:PR:Q9SCJ9PROSITE:PS00972PROSITE:PS00973
PROSITE:PS50053PROSITE:PS50235PROSITE:PS51283ProteinModelPortal:Q9SCJ9
Proteomes:UP000006548RefSeq:NP_566922.1scanprosite:PS00972scanprosite:PS00973
SMART:SM00695SMR:Q9SCJ9STRING:3702.AT3G49600.1SUPFAM:0050384
SUPFAM:SSF143791SUPFAM:SSF54001SUPFAM:SSF54236TAIR:AT3G49600
tair10-symbols:ATUBP26tair10-symbols:SUP32tair10-symbols:UBP26UniGene:At.22294
UniProt:Q9SCJ9
Coordinates (TAIR10) chr3:-:18380942..18386662
Molecular Weight (calculated) 119940.00 Da
IEP (calculated) 5.88
GRAVY (calculated) -0.48
Length 1067 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSRPNTRNKN KRQRPDAVDS SSQILRKIHE ANDVTDDDIN QLFMIWKPVC QGCRVNTRDN PNCFCGLVPP LNGSRKSGLW QKTSEIIQSL GPDPTLDRRD
0101: SESTPAGLTN LGATCYANSI LQCLYMNTAF REGVFSVEVH VLKQNPVLDQ IARLFAQLHA SQKSFVDSDA FVKTLELDNG VQQDTHEFLT LLLSLLERCL
0201: LHSGVKAKTI VQDLFSGSVS HVTTCSKCGR DSEASSKMED FYALELNVKG LKSLDASLND YLSLEQLNGD NQYFCGSCNA RVDATRCIKL RTLPPVITFQ
0301: LKRCIFLPKT TAKKKITSSF SFPQVLDMGS RLAESSQNKL TYDLSAVLIH KGSAVNSGHY VAHIKDEKTG LWWEFDDEHV SELGKRPCNE ASSSTPQSES
0401: NGTASSGNIT DGIQSGSSDC RSAIKSEVFS SSDAYMLMYS LRCDKQENQE GQKENPIDIT KGEVKQLKGG YLPKHLSEWI NNMNAVFLES CKQYNLRKEK
0501: ELNALTERRQ EVRTILSEAA VQSLEEQYFW ISTDWLRLWA DTTLPPALDN TPLLCSHGKV HASKVNCMKR ISELAWIKLE SKFNGGPKLG KGDYCRDCLM
0601: DGARMVVSSD SYRDRRTFMK SIANDVLSGK CEDGMYYISR AWLQQWIKRK NLDAPTEADA GPTNAITCNH GELMPEQAPG AKRVVVPENF WSFLFEDALK
0701: VMSEDTLDCT CFPVDSSQCC HCTEVLSEVA CFEDSLRTLK VKQRQNHEKL ATGKGIPLTP QSRYFLLPSP WLVQWRIYIN MTGKNSSSAP EPERLDGVIN
0801: TLKCKKHTRL LERLPELVCR RGSYFQKNPS TDKLTIIPEL DWKYFCDEWG GLMENGISAF IEVGNTDQSS SPDVIDLEKD SSPDDNMDVD AQQLILRASP
0901: EICEECIGER ESCELMQKLS YSEGDVFVCF VRGKEAPKAM LEASDSSFEV DRRTSKRSRR TNYGNLTSLK VSATTTVYQL KMMIWELLGV MKENQELHKG
1001: SKVIDQESAT LADMNIFPGD RLWVRDTEMH EHRDIADELC EKKPGAQDIE EGFRGTLLTG NISSEAC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)